PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17631.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 703aa    MW: 79807.4 Da    PI: 9.7949
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17631.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.29.1e-11487531953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ +e L ++F++n  p ++ re L+k+lgL++++V+ WF+N R+
  KHN17631.1 487 HDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARY 531
                 67899**************************************97 PP
2PHD383.9e-13224279151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C  C    +  +++++lC+ +Ck++fH+kCl+++l++e++p g   w+C+ C++k
  KHN17631.1 224 FCVKCTVreELPDNDIILCNgTCKRAFHQKCLDPPLDTENIPPGeqGWFCKFCECK 279
                 588888844445*******956********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.4E-14216282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-11220279IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.514222279IPR019787Zinc finger, PHD-finger
SMARTSM002493.6E-7224277IPR001965Zinc finger, PHD-type
CDDcd155047.14E-29224276No hitNo description
PfamPF006282.0E-10224279IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.3E-11469530IPR009057Homeodomain-like
SuperFamilySSF466897.7E-10472535IPR009057Homeodomain-like
PROSITE profilePS5007111.272476536IPR001356Homeobox domain
CDDcd000864.82E-8477531No hitNo description
SMARTSM003892.3E-6478540IPR001356Homeobox domain
PfamPF000462.6E-8487531IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MRDSEKKLNK KGSKKSSPLK VRKKGQGKKE KVKVGSKSHT KNAGTDISRK RVISSLKVKG  60
PPKDSSDKKL IIGKKLPIKN KKSSQKPSSK LQGKKASLSS RKEGGDADGA VKLPKMKRKR  120
KKKRQRNNVD LDDPSRLQRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK IKPEKELQRA  180
RKQILKCRLG IRDVIRQLDS LGSLSSIEDS AIAPDGSVYH EHIFCVKCTV REELPDNDII  240
LCNGTCKRAF HQKCLDPPLD TENIPPGEQG WFCKFCECKM EILEATNAHL GTHFSLHSTW  300
QDVFKEEAAI PDGETALLNP EEEWPSDDSE DDDYDPERKE DSHNINTEGA NDSASEDLTS  360
STSLCSSDGE SSPVDGVSHE YFSVKSSIDS DESEDKACGC RQRKAVDYKK LYDEMFGKDA  420
PAYEQLSEDE DWGPGKRKRR EKESDAVDSL MTLHESEYMH PNNEHLDMTR KNSSSIKIKR  480
HCFRIPHDAV EKLRQVFAEN ELPPRSIREG LSKELGLDTE KVSKWFKNAR YLALKNRKYQ  540
AEGGADQLQS ITSTKNSRLQ NQEIFDLLKS KTSKITTTHF QKDVKNVNGR KKTKSSNKKR  600
QPEIPPPPGE NGNMDFMEIS DDVSLKKLLK KRKKRLISFT FEGDSQAAEL EFERLSKLKT  660
KVDSMKQKLT AIQNSRVKDS NEPHSSEPSI VYVPTAVLRE KVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122MKRKRKKK
2117123RKRKKKR
3120125KKKRQR
4436441RKRREK
5624632LKKLLKKRK
6626632KLLKKRK
7628635LKKRKKRL
8629633KKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17631.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-162AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028211214.10.0pathogenesis-related homeodomain protein-like
RefseqXP_028211215.10.0pathogenesis-related homeodomain protein-like
RefseqXP_028211216.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-154PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A445G2J90.0A0A445G2J9_GLYSO; Pathogenesis-related homeodomain protein isoform C
STRINGGLYMA17G06690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-152pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]