PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17602.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 500aa    MW: 54222.9 Da    PI: 9.8034
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17602.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.1e-15243294155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN17602.1 243 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 294
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.298116208IPR001471AP2/ERF domain
SMARTSM003804.7E-7160214IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9162210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-9175209IPR001471AP2/ERF domain
CDDcd000187.61E-11176210No hitNo description
SuperFamilySSF541716.54E-18243304IPR016177DNA-binding domain
PfamPF008476.4E-10243294IPR001471AP2/ERF domain
CDDcd000181.39E-24243304No hitNo description
SMARTSM003801.5E-33244308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18244303IPR001471AP2/ERF domain
PROSITE profilePS5103219.045244302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDSSSSSPPN STNNNSLAFS LSNHFPNPSS SPLSLFHSFT YPSLSLTATR RRVCTATASA  60
VLHRQQQPPI RFGAEVNNSR VLPSRLGRRT KHRTAKTIPQ ENRRHLRATH LHLPRHIDGL  120
GDTKLIYGTI VAEGKVKAGK EGKILTVLCF VSLRGFCTWG IIADSWGSFA HYAVSVYLGG  180
YDKEDKAARA YDLAALKYWG PTTTTNFPIS NYEKELEEMK NMTRQEFVAS LRRKSSGFSR  240
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  300
FDMSRYDVKS IANSTLPIGG LSGKNKNSTD SASESKSHEP SQSDGDPSSA SSQDPSDYWS  360
ILGYHNTPLD NSGIRNTTST VTTTTFPSSN NGTASSLTPF NMEFSSAPSS TGSDNNAAFF  420
SGGGIFVQQQ TSHGHGNGSS GSSSSSLSCS IPFATPIFSL NSNTSYESSA GYGNWIGPTL  480
HTFQSHAKPS LFQTPIFGME
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758570.0HM775857.1 Glycine max aintegumenta-like 5 mRNA, complete cds.
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242799.10.0AP2-like ethylene-responsive transcription factor AIL5
RefseqXP_028211618.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A445G3830.0A0A445G383_GLYSO; AP2-like ethylene-responsive transcription factor AIL5 isoform B
STRINGGLYMA17G07010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.18e-90AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]