PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17521.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 367aa    MW: 42391.8 Da    PI: 6.6809
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17521.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-1249105155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  KHN17521.1  49 SIYRGVTRHRWTGRYEAHLWDkHCWNEsQNKKGRQGAYDNEEAAAHAYDLAALKYWG 105
                 57***********************9998888888********************98 PP
2AP251.62.3e-16148199155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KHN17521.1 148 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 199
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-849105IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1549115IPR016177DNA-binding domain
PROSITE profilePS5103218.74250113IPR001471AP2/ERF domain
SMARTSM003803.8E-1950119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-1350114IPR001471AP2/ERF domain
PRINTSPR003675.5E-65162IPR001471AP2/ERF domain
CDDcd000182.17E-24148209No hitNo description
SuperFamilySSF541718.5E-18148209IPR016177DNA-binding domain
PfamPF008471.4E-12148199IPR001471AP2/ERF domain
SMARTSM003804.8E-25149213IPR001471AP2/ERF domain
PROSITE profilePS5103218.386149207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17149208IPR001471AP2/ERF domain
PRINTSPR003675.5E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAKKSQLRTQ KNNVTTNDDN NLNVTNTVTT KVKRTRRSVP RDSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK HCWNESQNKK GRQGAYDNEE AAAHAYDLAA LKYWGQDTIL NFPLSNYLNE  120
LKEMEGQSRE EYIGSLRRKS SGFSRGISKY RGVARHHHNG RWEARIGKVF GNKYLYLGTY  180
ATQEEAATAY DLAAIEYRGL NAVTNFDLSR YIKWLKPNNN TNNVIDDQIS INLTNINNNN  240
NCTNSFTPSP DQEQEASFFH NKDSLNNTIV EEVTLVPHQP RPASATSALE LLLQSSKFKE  300
MMEMTSVANL SSTQMESELP QCTFPDHIQT YFEYEDSNRY EEGDDLMFKF NEFSSIVPFY  360
QCDEFES
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17521.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-149AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550676.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028208979.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-100AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1MSZ00.0I1MSZ0_SOYBN; Uncharacterized protein
STRINGGLYMA17G07860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-89ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]