PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17473.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 317aa    MW: 35583.3 Da    PI: 9.6892
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17473.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.51.2e-10113171301
   GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                 mdd  ++e  r+k  yy+              ++ ++l   +++++ s++aer+a+i   e ++a+sek++a+a+rd a  qrd+ala+r++al+erdn
  KHN17473.1   1 MDDGRQHEngRHKMeYYRgahslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDN 97 
                 677666555899988999999999999877663335666..99**************76677889********************************** PP

   GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkkseksk 175
                 +l+al+ ++ns   + p+g ++  g+k ++++ + + +++++ a++++++ + +a p++  ++ea +++++k+++++k+  +k +k   k+kk +e+ +
  KHN17473.1  98 ALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVINSKASKppcKVKKMGEDLN 193
                 *******9998..66799999999******8887.669*******************999999998888888777776655555554468888888887 PP

   GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                 ++ ++e+  ++ ++e++ +d+++n v++De+ + vPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aRi+grKmS+++f++lL++L +
  KHN17473.1 194 RQASSEG--TKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVS 290
                 7777777..67**************************************************************************************** PP

   GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                 eG+dls p+DLk++WA+HGtn+++ti+
  KHN17473.1 291 EGHDLSIPLDLKEYWARHGTNRYITIK 317
                 **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.0E-1351317IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-951317IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDDGRQHENG RHKMEYYRGA HSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL  60
EAAISEKNEA LAARDAAIRQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG  120
SKRMHHSSNH LSNMTEAAYN TKDMIIRDAS PVTVIPSEAV NSHQSKRSKE NKVINSKASK  180
PPCKVKKMGE DLNRQASSEG TKIRSEWDRQ DVGVNLVAFD ETIMLVPVCT CTGVPRQCYK  240
WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD  300
LKEYWARHGT NRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525427.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_003525429.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_006580620.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233459.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233460.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233461.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-125BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0B2QBP80.0A0A0B2QBP8_GLYSO; Protein BASIC PENTACYSTEINE4
TrEMBLI1K6R50.0I1K6R5_SOYBN; Uncharacterized protein
STRINGGLYMA05G38430.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-122basic pentacysteine 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]