PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17339.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 283aa    MW: 32339.2 Da    PI: 5.0037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17339.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-20111161256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 +++GVr+++ +grW+AeIrdp+    r +r++lg+f+taeeAa  +++a+ k++g+
  KHN17339.1 111 KFRGVRQRP-WGRWAAEIRDPT----RrTRVWLGTFDTAEEAAMVYDKAAIKFRGA 161
                 89*******.**********84....34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.8E-37111174IPR001471AP2/ERF domain
PROSITE profilePS5103223.802111168IPR001471AP2/ERF domain
CDDcd000183.6E-35111167No hitNo description
Gene3DG3DSA:3.30.730.102.0E-30111168IPR001471AP2/ERF domain
PfamPF008471.6E-13111160IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22111167IPR016177DNA-binding domain
PRINTSPR003677.0E-11112123IPR001471AP2/ERF domain
PRINTSPR003677.0E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEYQRKTIIT KLVKSSKFLP KVIRISVTDQ DATDSSSDEE GEHARVKKVI NEIKIVCVNN  60
KKNHKNHDND SSCCYANATK ENESLRPQQQ NINPLNKVGY MNQNQNLKQH KFRGVRQRPW  120
GRWAAEIRDP TRRTRVWLGT FDTAEEAAMV YDKAAIKFRG AEAVTNFIKP RLKDHESVSL  180
ECDSVVNGTS SACASPTSVL VFQPWIEPPL LEETFKEEEV FNGLTTDVYC DDGFLFSNEA  240
LCDQPLPTTF CNVDCIDIPL DEDLESCKWD VDNYFSDDAS WKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22108167262ATERF1
3gcc_A2e-22108167262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520362.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_028224889.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0B2QBK90.0A0A0B2QBK9_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLK7KE100.0K7KE10_SOYBN; Uncharacterized protein
STRINGGLYMA03G23330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-35cytokinin response factor 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]