PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17230.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 306aa    MW: 34349.6 Da    PI: 9.9482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17230.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18170203134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+t++TplWR gp g+k+LCnaCG+++rk +
  KHN17230.1 170 CSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 203
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-18164215IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.086164200IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-12165204No hitNo description
Gene3DG3DSA:3.30.50.103.9E-15168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.13E-12169206No hitNo description
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15170203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTPYSLNPPG PSIQAGQNQL FNISPNNQDC RTFFNIFDPR QTSIEIGGLR ENYRQDDKMI  60
LHDGSSSNCN SSFNISPETV VMVDPLSSAC DRRNLPSEEE SKNNDHGSGN KWMSSKMRLM  120
KKMMRPSISP TTDKAINSSP RFQNHQGLES RRYSQRSPRN NNGSSTPRVC SDCNTSTTPL  180
WRTGPKGPKS LCNACGIRQR KARRAMAEAA NGLVTPIACE KTRLHNKEKK SRMNHFAQFK  240
NKYKSTTTTT TTTVGSSEGV RKLEYFNNFA ISLRSNNSDF EQMFPRDEVA EAALLLMDLS  300
CGFVHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-79AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545375.10.0putative GATA transcription factor 22
RefseqXP_028199200.10.0putative GATA transcription factor 22
TrEMBLK7M5W00.0K7M5W0_SOYBN; Uncharacterized protein
STRINGGLYMA14G10830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-21cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]