PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN17230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 306aa MW: 34349.6 Da PI: 9.9482 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.3e-18 | 170 | 203 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+t++TplWR gp g+k+LCnaCG+++rk + KHN17230.1 170 CSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 203 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.4E-18 | 164 | 215 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.086 | 164 | 200 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-12 | 165 | 204 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-15 | 168 | 203 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.13E-12 | 169 | 206 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 170 | 195 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-15 | 170 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MTPYSLNPPG PSIQAGQNQL FNISPNNQDC RTFFNIFDPR QTSIEIGGLR ENYRQDDKMI 60 LHDGSSSNCN SSFNISPETV VMVDPLSSAC DRRNLPSEEE SKNNDHGSGN KWMSSKMRLM 120 KKMMRPSISP TTDKAINSSP RFQNHQGLES RRYSQRSPRN NNGSSTPRVC SDCNTSTTPL 180 WRTGPKGPKS LCNACGIRQR KARRAMAEAA NGLVTPIACE KTRLHNKEKK SRMNHFAQFK 240 NKYKSTTTTT TTTVGSSEGV RKLEYFNNFA ISLRSNNSDF EQMFPRDEVA EAALLLMDLS 300 CGFVHL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN17230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-79 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545375.1 | 0.0 | putative GATA transcription factor 22 | ||||
Refseq | XP_028199200.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | K7M5W0 | 0.0 | K7M5W0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G10830.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26150.1 | 4e-21 | cytokinin-responsive gata factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|