PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN17181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 711aa MW: 78062.1 Da PI: 7.2255 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.9 | 2.2e-12 | 342 | 398 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g KHN17181.1 342 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 398 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 45.8 | 1.5e-14 | 443 | 492 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN17181.1 443 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 492 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.41E-14 | 342 | 407 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 342 | 398 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.68E-18 | 342 | 405 | No hit | No description |
SMART | SM00380 | 1.6E-20 | 343 | 412 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.937 | 343 | 406 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-12 | 343 | 406 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 344 | 355 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-17 | 441 | 501 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.74E-24 | 441 | 502 | No hit | No description |
SMART | SM00380 | 6.0E-33 | 442 | 506 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-18 | 442 | 500 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 442 | 500 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-9 | 443 | 492 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 482 | 502 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MKSMNDSNTN DGNNHNWLGF SLSPHMKMDV TSSTGAPQHH HHHYYHHPQA SAAAACNNNT 60 VPTNFYMSPS NLNTSGICYG VGGNSTFHTP LAMMPLKSDG SLCIMEALTR SQTQVMMPTS 120 SPKLEDFLSG ATMGAQDYGT HEREAMALSL DSIYYSNQNA EPETNRDHSS SLDLLSDPFR 180 HQNHSYYSGL GIYQVEEEET KEQPPPPPHH VAVCCSQVPQ VVEGIACFKN WVPPREFSSS 240 TQQNLEQDQV NSSRSGGLGE DNNNGASGNI GVGSSVGCGE LQSLSLSMSP GSQSSCVTVP 300 TQISSSGTDS VTVDAKKRGS SKLGQKQPVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL 360 WDNSCKKEGQ TRKGRQGGYD MEEKAARAYD LAALKYWGPS THINFSLENY QTELEEMKNM 420 SRQEYVAHLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA 480 EAYDIAAIKF RGLNAVTNFD ITRYDVERIM ASNTLLAGEV ARRNKNSEPR TEAIEYNVVS 540 SQQVISNREE VHEAVNNNNN NENGSSSDWK MGLYHHQQQQ QQSNNCDQKT MKCGNYNRGG 600 GGAAAAFSVS LQDLIGIESV VGSSQGMMNE STKIGTHFSN PSSLVTSLSS SREGSPDKTG 660 PTLLFPKPPM GSKIVTSPTI ANGVTVGSWF PSQMRPVSMS HLPFFAAWSD T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN17181.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028198845.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-153 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A445H3M6 | 0.0 | A0A445H3M6_GLYSO; AP2-like ethylene-responsive transcription factor ANT isoform C | ||||
STRING | GLYMA14G10130.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |