PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17095.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 366aa    MW: 41592.4 Da    PI: 6.2773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17095.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.21.4e-89836424374
        GRAS  24 LarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.....ervHiiDf 117
                 L+ l +++s +gd++qR++ayf+ +Laarl+ + s  y+ l  ++t+    +ee+ a++ ++ vsP+++f+h+taNqaIlea+e+e     +++H+iDf
  KHN17095.1   8 LTDLYQTVSVTGDSVQRVVAYFVDGLAARLLTKKSPFYDMLMEEPTT----EEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEeernnRALHVIDF 102
                 7889999*******************************999998887....677888899************************9988877789***** PP

        GRAS 118 disqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                 d+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s +el+et++rL +f + +g + fef+ l    l   ++ +Lr k++E++aVnlv  l +l
  KHN17095.1 103 DVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGK----SLKELQETESRLVSFSKGFGsLVFEFQGL----LRGSRVINLRKKKNETVAVNLVSYLNTL 193
                 *****************99755566*********....9*****************97689*****8....77778899***************99999 PP

        GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhe 310
                      +  + ++++L +v sl+P +vvvveqe +++  sFl rf+++l+y++a+fdsl+  lp es er  +E++llg+ei++++ +  +      + e
  KHN17095.1 194 S----CFMK-ISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGgvDCPKYE 287
                 7....3333.578************************************************************************9986663356799* PP

        GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.s.......dg...yrveee.sgslv.lgWkdrpLvsvSaWr 374
                 ++e W++r+e+ GF + ++s+k + qaklll++   +       +g   +rv e+ +g ++ lgW++r L++vSaW+
  KHN17095.1 288 RMEAWKARMENHGFVATKISSKSMIQAKLLLKMRThFcplqfeeEGgggFRVSERdEGRAIsLGWQNRFLLTVSAWQ 364
                 *******************************9864331111111223347777654555557**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.6271331IPR005202Transcription factor GRAS
PfamPF035144.7E-878364IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSSLENLTD LYQTVSVTGD SVQRVVAYFV DGLAARLLTK KSPFYDMLME EPTTEEEFLA  60
FTDLYRVSPY FQFAHFTANQ AILEAFEKEE ERNNRALHVI DFDVSYGFQW PSLIQSLSEK  120
ATSGNRISLR ITGFGKSLKE LQETESRLVS FSKGFGSLVF EFQGLLRGSR VINLRKKKNE  180
TVAVNLVSYL NTLSCFMKIS DTLGFVHSLN PSIVVVVEQE GSRSPRSFLS RFTDSLHYFA  240
AMFDSLDDCL PLESAERLRI EKKLLGKEIK SMLNNDVDGG VDCPKYERME AWKARMENHG  300
FVATKISSKS MIQAKLLLKM RTHFCPLQFE EEGGGGFRVS ERDEGRAISL GWQNRFLLTV  360
SAWQSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-55836342378Protein SCARECROW
5b3h_A7e-55836341377Protein SCARECROW
5b3h_D7e-55836341377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535540.10.0scarecrow-like protein 21
RefseqXP_028182536.10.0scarecrow-like protein 21
TrEMBLA0A445IQT20.0A0A445IQT2_GLYSO; Protein SCARECROW 1
STRINGGLYMA10G35920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.17e-55GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]