PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 422aa MW: 46096.6 Da PI: 8.9888 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131 | 4.2e-41 | 124 | 200 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ KHN16851.1 124 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 200 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-33 | 117 | 185 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.804 | 121 | 198 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-38 | 122 | 203 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-30 | 124 | 197 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MQLIRGPSWC GIQKGEQRKT EKVQVFMDWN LKAPSWDLSE VDQANLPNME TMEGSSRYGM 60 YRTKGEFSVD LKLGQVGNSG TESSVLTKSK DGGAVGVSKM ISSSSSGSAK RARSLSNGTQ 120 TVSCLVDGCH SDLSNCRDYH RRHKVCEVHS KTAQVTIGGQ KQRFCQQCSR FHSLEEFDEG 180 KRSCRKRLDG HNRRRRKPQP EVVLTRSASF LSNYHQGTQL LSFSSSHVYP STTVVNPTLG 240 GVLTSGDVRL HGQNHLHHQM HLVDKQDLFL GSSPTGYKEG KHLAFMQGDH TLNNQSPHLP 300 GASVGPAQMF LRTSPYSESG GLRCKMFCDS LTGSAHGNTS RALSLLSSPP QPHSPGNGLN 360 QMVNPHSPLM QPLGLSLHDN SLGSVDPVLG PNGSDHSSSM HHIGSNGSQV NEAPPLFPFQ 420 WE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-28 | 124 | 197 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 197 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16851.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247113.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X1 | ||||
TrEMBL | A0A445J869 | 0.0 | A0A445J869_GLYSO; Squamosa promoter-binding-like protein 13B isoform A | ||||
STRING | GLYMA08G01450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-68 | SBP family protein |
Publications ? help Back to Top | |||
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