PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16427.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 522aa    MW: 58316.8 Da    PI: 6.2166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16427.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13361407455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  ++ YI++Lq
  KHN16427.1 361 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDTIAYINELQ 407
                 799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-4458221IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.18E-18356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.34E-14360411No hitNo description
PfamPF000102.4E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-18361421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MKVDAGLGRV VWDDEDKAML GAVLGGRALE FLMTNSVSNE SVLMAVGSEE GLQNKLSLSQ  60
SKSGDWVLGW GDGCCREPNE EEEEGAVTVR RRTLRVDEEE MQQRMRKRVL QKLHTTFGGE  120
DEDNYAFGLD HVTDTEMFFL ASMYFSFPRG HGAPGKCFAS GNHFWLKSVS VSDHCVRSSL  180
ANAAGIQTIV LVPTDLGVVE LGSVRMLPES FELLQAVKSV FSTPIPKVLV NTIRNQTHFR  240
EKLAVRKMED NRPWNNNNVS FPNVRSNGLH VSSCWPVNSG LRQPAPRVVA ELANGVRQDL  300
RLSNSYEPQR QVQMQIDFSG GTSRPSDVEA SCKEEQPSVA DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RSVVPNISKM DKASLLGDTI AYINELQAKV KIMEAERERF  420
ESISNQEKEA PADVDIQAVQ DDEVIVRVSC PLDNHPLSKV IQTFNQTQIS VVESKLASAN  480
DAIFHTFVIK SQGSEQLTKD KLIAVFSPTE SNSLQPFSSV GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29355417264Transcription factor MYC2
5gnj_B3e-29355417264Transcription factor MYC2
5gnj_E3e-29355417264Transcription factor MYC2
5gnj_F3e-29355417264Transcription factor MYC2
5gnj_G3e-29355417264Transcription factor MYC2
5gnj_I3e-29355417264Transcription factor MYC2
5gnj_M3e-29355417264Transcription factor MYC2
5gnj_N3e-29355417264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16427.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226868.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0B2Q9F10.0A0A0B2Q9F1_GLYSO; Transcription factor bHLH13
STRINGGLYMA03G41901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-153bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]