PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 522aa MW: 58316.8 Da PI: 6.2166 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 361 | 407 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L ++ YI++Lq KHN16427.1 361 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDTIAYINELQ 407 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.6E-44 | 58 | 221 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.18E-18 | 356 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.149 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.34E-14 | 360 | 411 | No hit | No description |
Pfam | PF00010 | 2.4E-10 | 361 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-18 | 361 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-16 | 363 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MKVDAGLGRV VWDDEDKAML GAVLGGRALE FLMTNSVSNE SVLMAVGSEE GLQNKLSLSQ 60 SKSGDWVLGW GDGCCREPNE EEEEGAVTVR RRTLRVDEEE MQQRMRKRVL QKLHTTFGGE 120 DEDNYAFGLD HVTDTEMFFL ASMYFSFPRG HGAPGKCFAS GNHFWLKSVS VSDHCVRSSL 180 ANAAGIQTIV LVPTDLGVVE LGSVRMLPES FELLQAVKSV FSTPIPKVLV NTIRNQTHFR 240 EKLAVRKMED NRPWNNNNVS FPNVRSNGLH VSSCWPVNSG LRQPAPRVVA ELANGVRQDL 300 RLSNSYEPQR QVQMQIDFSG GTSRPSDVEA SCKEEQPSVA DERKPRKRGR KPANGREEPL 360 NHVEAERQRR EKLNQRFYAL RSVVPNISKM DKASLLGDTI AYINELQAKV KIMEAERERF 420 ESISNQEKEA PADVDIQAVQ DDEVIVRVSC PLDNHPLSKV IQTFNQTQIS VVESKLASAN 480 DAIFHTFVIK SQGSEQLTKD KLIAVFSPTE SNSLQPFSSV GW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-29 | 355 | 417 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 342 | 350 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16427.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028226868.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A0B2Q9F1 | 0.0 | A0A0B2Q9F1_GLYSO; Transcription factor bHLH13 | ||||
STRING | GLYMA03G41901.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-153 | bHLH family protein |
Publications ? help Back to Top | |||
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