PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN16421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 257aa MW: 28391.5 Da PI: 8.5631 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+++ KHN16421.1 20 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVT 80 6899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 15 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 22 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.031 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MEDIGPNSCT RPVTEKKARP QEQLNCPRCS STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRVT SSKVPDLNPP ISLSSVSAIS SQNPKMQGVH DLNLAFPAAM 120 DKYHHGTSPY VEMPKLEIGG DHSTSHHSHH HSHSPSSAVE LLRSGMDSRG LNPYAPNSLM 180 SGSDHSLYTP GYPMQEIKPN LSFSVDDGFG NRSYGVQENG GGRLLFPFGD IKHLSAGLEV 240 EHNKEQGNNS TGYWTGW |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN16421.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ857268 | 0.0 | DQ857268.1 Glycine max Dof18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520878.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_006577350.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Refseq | XP_006577351.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Refseq | XP_028226874.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X1 | ||||
Refseq | XP_028226875.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Refseq | XP_028226876.1 | 0.0 | dof zinc finger protein DOF2.5-like isoform X2 | ||||
Swissprot | Q9ZPY0 | 3e-58 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A0B2Q4C4 | 0.0 | A0A0B2Q4C4_GLYSO; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | I1JS12 | 0.0 | I1JS12_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7KH42 | 0.0 | K7KH42_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41980.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61850.4 | 5e-66 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|