PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 420aa MW: 47128.1 Da PI: 7.3227 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.9 | 6.5e-31 | 88 | 191 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l+ KHN16393.1 88 FEKVATPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDlYRHRLY 186 89***************************966778999*************************************************655666666666 PP EEEE- CS B3 94 vkvfr 98 + + r KHN16393.1 187 IDWKR 191 66655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-41 | 80 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-29 | 85 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.88E-27 | 86 | 175 | No hit | No description |
SMART | SM01019 | 1.8E-22 | 88 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-28 | 88 | 192 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.944 | 88 | 193 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MELMQQVKGN YSDSREEEEE EEAAAITRES ESSRLHQQDT ASNFGKKLDL MDLSLGSSKE 60 EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA EKYFPLDSST 120 NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGLGDL 180 YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH FHHHLNYNNL 240 FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG RGSNIVPMII 300 DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE LSSGSAAHVT 360 TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD LDPSLQYHRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-63 | 81 | 193 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-63 | 81 | 193 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16393.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-147 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520889.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577361.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577363.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577364.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_014629549.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_028226917.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226918.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226919.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226920.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226921.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Swissprot | O82799 | 2e-79 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0B2Q8P5 | 0.0 | A0A0B2Q8P5_GLYSO; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | K7KH74 | 0.0 | K7KH74_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G42301.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 8e-65 | B3 family protein |