PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN16177.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GeBP

Protein Properties

Length: 313aa MW: 35176.7 Da PI: 10.0038

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN16177.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	122.5	2.1e-38	38	133	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ v+k++sgk++sf+++hd+ +fe+s++iW KHN16177.1 38 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHSDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVVTKISSGKDVSFKSPHDKATFEISRRIWS 133 79*********************************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.8E-35	39	133	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTMKPNPLPP SSPSRRPLPK RSTELIEEKK ALDDSRRLFQ RLWTDEDEIG LLQGFLDYTA 60 QRGSSHHSDT ALFYDQIKSK LQLGFNKNQL VEKLRRLKKK YRNVVTKISS GKDVSFKSPH 120 DKATFEISRR IWSNTAPISG PVEDDDEINP NPNFGNSAKT PISRKRSRPQ KRELNDGSTL 180 NRDNNCIGNN NNNSNSNNNN NNENCNGRHN LQGLIEETVK SCVSPVLKEL VCGTGGMGLG 240 RGFGVGGGLA LNSLQTQMTM PMTLLNLRIG ETTMDEKWRK QQILELEVYS KRLELVQNEI 300 KVALEELRSA GGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN16177.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-153	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028185353.1	1e-177	probable transcription factor At3g04930
Refseq	XP_028185354.1	1e-177	probable transcription factor At3g04930
Swissprot	F4K5T4	1e-83	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A445IN57	1e-176	A0A445IN57_GLYSO; Putative transcription factor isoform A
STRING	GLYMA10G30160.3	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-74	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]