PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16145.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 321aa    MW: 35480.6 Da    PI: 5.438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16145.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12119170155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   Av+++k+L+
  KHN16145.1 119 QRMTHIVVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAVNFVKELE 170
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-13117174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.07E-13117174No hitNo description
PROSITE profilePS5088815.243118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-9124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEAVVFPQ SQDPFGSGYG SVNTKDFYNY TLLAATYEQQ HINKEEEQGG ASISTFQPET  60
SNYPYGDWTT SSSSSMLPHL NNELQETTTT SSNTLDSLNT RPKRRRAKSR KNKEEIENQR  120
MTHIVVERNR RKQMNEYLSV LRSLMPDSYI QRGDQASIIG GAVNFVKELE QRLHFLGAQK  180
EGEGKSDDGG ATNMPFSEFF TFPQYSTGGG GGGGSDNSAA IGEDVSEVKC GIADIEVTMV  240
ESHANLKIRS KKCPKQLLKL VSGLHTVRLT ILHLNVTTTG EVVLYSLSVK VEDDCKLGSV  300
DDIAAAVYQM LDRIQQEAML N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119130RMTHIVVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934680.0BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183377.10.0transcription factor bHLH94-like
SwissprotQ9C7T44e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445IN170.0A0A445IN17_GLYSO; Transcription factor bHLH96
STRINGGLYMA10G29760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]