PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16112.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 584aa    MW: 64698.6 Da    PI: 8.871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16112.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0592114123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++C+k F r  nL+ H r H
  KHN16112.1  92 FICEICNKGFQRDQNLQLHRRGH 114
                 89*******************88 PP
2zf-C2H2110.0014168190123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H + +
  KHN16112.1 168 WKCDKCSKKYAVQSDWKAHSKIC 190
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.38E-791114No hitNo description
Gene3DG3DSA:3.30.160.601.6E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84592114IPR007087Zinc finger, C2H2
PfamPF121717.2E-592114IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02292114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355220133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.38E-7163188No hitNo description
SMARTSM00355150168188IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.40.1000.104.8E-38402582IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
PfamPF017896.7E-24404581IPR002683PsbP family
SuperFamilySSF557244.87E-26406582IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015979Biological Processphotosynthesis
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0019898Cellular Componentextrinsic component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTRED AAVKQQQSEM LGQFHSPHSH TSTTTTNNSN GSNTNSQPPA  60
PVKKKRSLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRTSTEIRK RVYVCPEPSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ  180
SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKANEGQ LPKIGPNLQC  240
QQIPNLVSSL PINTNSIVPN PAQMGGTTSE FNHADHKHPL SLPHELMPMP AQKPFNNNMA  300
AGTVFTRSLS STSSPSLQLS SNMFDENGLH LAAGSPHMSA TALLQKAAQM GATLTEKSTF  360
ATNMAPPSFG VLQQHHHHQQ PNGQPFTNQY MHSGHHHQQQ EVNISTQYSF EFIYPANWVG  420
DQTLLYRAAK KREMERSLDP PPLNERRRSN INEPVVAFGP PGSTGELNVS VIVSSVAPEF  480
SIEAFGGPDE VGEAVVRSIT GSGQRPDVKG TLIKSSLRED SVTNVKYYEL EFRVGSPSFR  540
RHNVSVCCAR DGRLFTLNAQ APESEWPGLK SEFYRIANSF SLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-33164225364Zinc finger protein JACKDAW
5b3h_F6e-33164225364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359140.0AC235914.2 Glycine max clone GM_WBc0225O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535336.10.0protein indeterminate-domain 2
RefseqXP_028184221.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A445IMU10.0A0A445IMU1_GLYSO; Protein indeterminate-domain 2
TrEMBLI1LBB30.0I1LBB3_SOYBN; Uncharacterized protein
STRINGGLYMA10G29390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]