PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 618aa MW: 68575.6 Da PI: 6.3937 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 451 | 497 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq KHN15926.1 451 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINQLQ 497 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.6E-53 | 51 | 235 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.88E-18 | 446 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.028 | 447 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-15 | 450 | 501 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.7E-18 | 451 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-11 | 451 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-17 | 453 | 502 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MKIEVGLGGV WNEDEKATVV EVLGREAFDY LVANSVSNEN LLMAFGSGEN LQNKLSGLVE 60 RPNASNFSWN YAIYWQISQS KYGDWILGWG DGCCREPRDG EEGGEVRIVD DEKVQRMRKR 120 VLQKLHMTFG GSDEDIYAFG LDRVTDTEMF FLVSMYFSFP RGLGGPGKCF ASGKHLWISD 180 MFKSGFDYCV RSFLAKSAGI QTVVLVPTDL GVVEMGSVRT VDESFELLQA VKSVFSAPLV 240 LPKVKPTAPL DLVSEKRDGN ESANALFCGL AIVDKNKNNN SHSNNRVEGV GVPKIFGQDL 300 NCSTQFREKL AVRKMEERPW PWGGHPPNGN SIGFPNGVHG SSWGAGEVVR QLGHPEILAP 360 RLASSGALPD VANSAKNDFV HNNFQQQQLP VQMQFDFSRA TSRASERSII AESEISDIKA 420 SCKEERMSIA DDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 480 DKASLLGDAI AYINQLQAKL KTMEFERERF GSTCVDGPVL DVNAEVEKNH HNGAPDMDVQ 540 AAQDGVIVKV SCPIDVHPVS KVIQTFKEAE IGVVESRLTV ANDTVFHTFV VKSEGPDQVT 600 KDKLIALFSK ESNFIQTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 8e-29 | 445 | 507 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 432 | 440 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15926.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624758.1 | 0.0 | transcription factor bHLH13 | ||||
Refseq | XP_028205646.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A445GD83 | 0.0 | A0A445GD83_GLYSO; Transcription factor bHLH13 | ||||
TrEMBL | I1MKI1 | 0.0 | I1MKI1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G02690.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-113 | bHLH family protein |
Publications ? help Back to Top | |||
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