PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 716aa MW: 79453.6 Da PI: 6.4629 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 134 | 234 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF + + ++l KHN15923.1 134 FCKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGEHGQL 228 99****************************9543..445569************************************************..4489999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r KHN15923.1 229 RVGVRR 234 ****98 PP | |||||||
2 | Auxin_resp | 101.2 | 1.3e-33 | 260 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F+v ++k+++a+++k+s+GmRfkm+fe++ds+err+sGt+vgv d++ W+nS+WrsLk KHN15923.1 260 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEAVNNKFSLGMRFKMRFEGDDSPERRFSGTIVGVGDVSA-GWSNSQWRSLK 339 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-41 | 122 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-40 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.31E-19 | 132 | 234 | No hit | No description |
SMART | SM01019 | 4.2E-20 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-21 | 134 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 260 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.7E-5 | 588 | 632 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.94E-12 | 592 | 672 | No hit | No description |
PROSITE profile | PS51745 | 27.357 | 596 | 677 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.5E-6 | 637 | 678 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MAHLGCCNLG GPGSSGTSLP EKGLKDDDLY RELWKLCAGP LVDVPRTGDR VFYFPQGHME 60 QLQASTDQEL NQEIPHFNLP AKIFCRVVNI QLLAEQDTDE VYACIALLPE SDQTEPTNPD 120 PNISEPPKQK FHSFCKILTA SDTSTHGGFS VLRKHATECL PALDMTQATP TQELAAKDLH 180 GFEWKFKHIY RGQPRRHLLT TGWSTFVASK RLVAGDAFVF LRGEHGQLRV GVRRLARQQS 240 PMPSSVISSQ SMHLGVLATA SHAVMTRTMF LVYYKPRTSQ FIVGLNKYLE AVNNKFSLGM 300 RFKMRFEGDD SPERRFSGTI VGVGDVSAGW SNSQWRSLKV QWDEPATIPR PDRVSCWEIE 360 PFVASTALNV TQPAVKGKRS RPADVSSSAA SGFWYHGSSN ELSQLGAATA EVQSKENQVV 420 PCSLRQKDII NSNPIDANNS SISSRVRMEG VWPSSPHLNV TPNLFSDPNN NSVLARSPIS 480 GYLNVPSRSS DGPTCEHVED GKKIENSLDC WLFGVNLTNN CSNVIITTPS ERELRGPISS 540 SVAPSGPKES IPAAACETER VQTPNYSLSN KGQKQIISEA SPNEWQNKQA TVPSMRTRTK 600 VQMQGVAVGR AFDLTTLSGY DDLIEELEKL FEIRGELHSQ DKWAVTFTDD ENDMMLVGDD 660 PWPEFCNMVK RIFICSREDL KKMKCCKLPA SSSEVEEVLL SPDSQNRDET QQSHMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15923.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598900.1 | 0.0 | auxin response factor 18 isoform X3 | ||||
Refseq | XP_028207359.1 | 0.0 | auxin response factor 18-like isoform X2 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A445GD77 | 0.0 | A0A445GD77_GLYSO; Auxin response factor | ||||
TrEMBL | K7MET6 | 0.0 | K7MET6_SOYBN; Auxin response factor | ||||
STRING | GLYMA16G02650.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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