PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 582aa MW: 65550.7 Da PI: 7.4897 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.9 | 2.6e-30 | 195 | 293 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l+ KHN15868.1 195 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsYRHRLY 293 89***************************966667889*************************************************543444444455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 184 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.23E-29 | 191 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.66E-26 | 193 | 294 | No hit | No description |
Pfam | PF02362 | 9.4E-28 | 195 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-23 | 195 | 300 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 195 | 298 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MELMQEVKGY SDSREEEEEE EGAAEEESSR KHHYYPFSSS PSNLYLSSSS APSISSNYTS 60 TTTSAVARPL HHHHVINIPY QQNPWLGMNI VHHDHLIQSP ESHNSSSGLG LLHQHQDAAG 120 SNFIINNNQH HQHHHTTKQL DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN 180 NLQQQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN 240 GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR 300 DHHHHHHHGP VDPSTTLFTP FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ 360 PLNYNNNTMY HPFHHHGGGS GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM 420 PLADHQTLNT RQQQQQQQQQ QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG 480 GKSSGSSSPS TAGKRLRLFG VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL 540 REDTLSSSAA AAARFGDQRG GVGEPSTSIF FDLDPSLQYR KR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-63 | 189 | 299 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-63 | 189 | 299 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15868.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235293 | 0.0 | AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624616.1 | 0.0 | B3 domain-containing protein Os02g0683500 isoform X1 | ||||
Refseq | XP_014624617.1 | 0.0 | B3 domain-containing protein Os02g0683500 isoform X1 | ||||
Refseq | XP_014624618.1 | 0.0 | B3 domain-containing protein Os02g0683500 isoform X1 | ||||
TrEMBL | A0A445GCW5 | 0.0 | A0A445GCW5_GLYSO; B3 domain-containing protein isoform A | ||||
TrEMBL | K7MEN3 | 0.0 | K7MEN3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G01951.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-66 | B3 family protein |
Publications ? help Back to Top | |||
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