PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15835.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 488aa    MW: 55544 Da    PI: 6.8551
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15835.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.54.3e-2942127187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+++e++aL+++r+em+ ++++++lk+plWe+vs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+  +t+++f+qlea
  KHN15835.1  42 RWPREETMALLNIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGK-SNGAKTYRFFEQLEA 127
                 8********************************************************************97.67778********85 PP
2trihelix93.32.4e-29318410187
    trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k+ev aLi++r++++ + + ++       +k+plWee+s++m++ g+ rs+k+Ckekwen+nk++k+ike +k++ +++s+tcpy+++lea
  KHN15835.1 318 RWPKDEVEALIRLRTQIDVQAQWNNnnnnnngSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRK-PQDSKTCPYYHHLEA 410
                 8**************88877774333345566********************************************86.9***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5263599IPR017877Myb-like domain
SMARTSM007170.001939101IPR001005SANT/Myb domain
CDDcd122031.71E-2141106No hitNo description
PfamPF138373.1E-1941128No hitNo description
SMARTSM007172.0E-4315384IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-4316381IPR009057Homeodomain-like
PROSITE profilePS500907.433317382IPR017877Myb-like domain
PfamPF138378.5E-21317411No hitNo description
CDDcd122031.07E-21317389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLEISTSQET PLENADGGSA AVSDGSKAEH GEDDDRNPAA NRWPREETMA LLNIRSEMDV  60
AFKDANLKAP LWEQVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKEGRF GKSNGAKTYR  120
FFEQLEALDG NHSLLPPTTT VGDDVVLNAV PCSVSAAAHE HSSSTTSCSG KKKRKLTQFL  180
EGLMREVIEK QETLQRKFME VLDKCEKDRM AREEAWKKEE LERIKKEREL LAQERSIAAA  240
KDEVVLAFLR KFAEAEGTVQ LLEKIQVQND KQKNMKQNGG NDNANGGGGV TVVTDMDKQE  300
CGNNGVSVGN FVHMSSSRWP KDEVEALIRL RTQIDVQAQW NNNNNNNNGS KGPLWEEISS  360
AMKSLGYDRS AKRCKEKWEN INKYFKRIKE KSKRKPQDSK TCPYYHHLEA LYSKKPKKVD  420
HGNELKPEEL LMHIMVSQSQ EQQQEMQTQT QSPSEDAERD QNQGDNEDQS EYQNQMVDNN  480
SPSIAIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217530.0EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533931.10.0trihelix transcription factor GT-2
SwissprotQ391177e-63TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0B2Q3H60.0A0A0B2Q3H6_GLYSO; Trihelix transcription factor GT-2
STRINGGLYMA09G19750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-57Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]