PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15746.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 396aa    MW: 44900.1 Da    PI: 7.2754
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15746.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.68.6e-421042421132
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssa...seceaesssssasnsssg 88 
                 a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t +WL+++++ aikel+++        +       s+  +++s++++     +
  KHN15746.1 104 ATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTFDWLFTKSENAIKELARSkhtgsvsrG---DikySRYPSVDSNNNN-----K 194
                 579**************************************************************554333331...0221222222333333.....1 PP

         TCP  89 .....kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                        a+   k k +q+++ +  + +kesr++arararert  km+ 
  KHN15746.1 195 slvdgGDASRGRKLKWAQRDDVC-VQNKKESRERARARARERTCYKMCS 242
                 34444444444455666666653.666789*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-39105241IPR005333Transcription factor, TCP
PROSITE profilePS5136934.256107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.643222239IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSSSTYDSSN LFPNFPSSSY PILPFLIDPE NDFASHTLLD DHPLVVPAGL RHDPPLLPEE  60
TVANFAVVAD CTAAMLEHDA ANTNYGSHYG SSVSNFLTQK PAAATAKKDR HSKIHTSQGL  120
RDRRVRLSSE IARKFFDLQD MLEFDKPSNT FDWLFTKSEN AIKELARSKH TGSVSRGDIK  180
YSRYPSVDSN NNNKSLVDGG DASRGRKLKW AQRDDVCVQN KKESRERARA RARERTCYKM  240
CSCSRRVQQK DSDERFPATT NTQMLHQLRS SIQPELEDQP RARWVQPYYN NPYFIDNEAP  300
RNGFNVIEES IMIKRNMKPS SHQNLVIPRD ASFNNNEFPL LPYSSTTPNW DSTNGAVNFG  360
GISTMNLSTC FMNPWFIVQD METCMDQQVT DVLTGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224234RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220452.10.0transcription factor DICHOTOMA-like
TrEMBLA0A445F5B00.0A0A445F5B0_GLYSO; Transcription factor TCP1
STRINGGLYMA20G28670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-24TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]