PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15739.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 645aa    MW: 70250.6 Da    PI: 6.4021
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15739.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.44.6e-16357395240
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  KHN15739.1 357 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACRDCFNKP 395
                 689**********************************96 PP
2TCR50.54e-16442481140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  KHN15739.1 442 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNTY 481
                 589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-18356397IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.797357482IPR005172CRC domain
PfamPF036381.4E-11359394IPR005172CRC domain
SMARTSM011142.6E-17442483IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11444480IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MDTPDRSKIN TPLSQFEDSP VFKYISNLSP IEPVKSVHVT QTFNSYSFSS PPSVFTSPHG  60
NCHKESRFLR RHNLLETSKP KVSSEDVNNV YSCEETPADS AQACHESSEQ QENTAQKISV  120
ADASIEPCNE NKNPNISIEL PQVLKYNLGS PGYEPLLYGD EANSLLELPG NGKPASDVAS  180
VPEGSEKDSI EGEMHLPGLC QIEEAKVEGQ DCGVDSLITE ASDLLMFSPP EAFKGLNKQL  240
NPSIELSNIM TVIPQFATND GQQMHIGNAV ASGSEHEIED HPSESAAATG TSQRQDNLGN  300
LALVTSNPSE KMDNKLVYVT HRGIRRRCLD FEMASVQRRN PADNSKRKLE PAGEGESCKR  360
CNCKKSKCLK LYCECFAAGV YCIEPCACRD CFNKPIHVET VLQTRQQIES RNPLAFAPKV  420
IRSSDSVSEI GDDLNKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSV SCRCEGCKNT  480
YGRKDGSVPS GLEAEPEEET EACEKGVVEN ASWKTETQNT EDHPDQSLAT TPLPLSRSLL  540
PLSFSSKGKP PRSFVTTISS SGLFVSQKLG KSNAPRSQHQ PKCVKPLQTV PDDDSPVTCI  600
KTSSPNGKRI SSPNCDVGSS PTTRRGGRKL ILQSISSFPS LTPHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1736147914120Protein lin-54 homolog
5fd3_B6e-1736147914120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556061.10.0protein tesmin/TSO1-like CXC 3
RefseqXP_028222918.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A445F5680.0A0A445F568_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform B
TrEMBLA0A445F5C80.0A0A445F5C8_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform A
TrEMBLK7N3J00.0K7N3J0_SOYBN; Uncharacterized protein
STRINGGLYMA20G28740.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-76TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]