PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15689.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23204.3 Da    PI: 9.5442
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15689.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.2e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ie+++ rqv fskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss
  KHN15689.1  9 KKIEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 59
                68***********************************************96 PP
2K-box622.3e-21841641292
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                    ++l+ ++  + k+ie L++++R+llG++++s+s+ eL+ +e+qL +sl+++R++K++l++eqi++l+ + +++++  +
  KHN15689.1  84 DYIQQLKLDSVSMTKKIELLEHSKRKLLGQSVSSCSFDELKGIEEQLRTSLQRVRQRKTQLYTEQIDRLRSQYQRAERSSQ 164
                 556888999999**********************************************************99998887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.174161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-31374IPR002100Transcription factor, MADS-box
CDDcd002652.65E-39375No hitNo description
PRINTSPR004043.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.21686180IPR002487Transcription factor, K-box
PfamPF014861.1E-1887161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVRGKVQLKK IEDTTSRQVA FSKRRSGLLK KAYELSVLCD AEVAVIVFSQ NGRLYEFSSS  60
DMTKILERYR EYTKDVPGSK FGDDYIQQLK LDSVSMTKKI ELLEHSKRKL LGQSVSSCSF  120
DELKGIEEQL RTSLQRVRQR KTQLYTEQID RLRSQYQRAE RSSQQQWPRH TQAEAEPHCS  180
SSQSLDVDTE LFIGLPKQQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-23190189MEF2 CHIMERA
6byy_B7e-23190189MEF2 CHIMERA
6byy_C7e-23190189MEF2 CHIMERA
6byy_D7e-23190189MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220997.11e-144MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS13e-67AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A445F5J11e-143A0A445F5J1_GLYSO; MADS-box protein AGL42 isoform B
STRINGGLYMA20G29300.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-69AGAMOUS-like 42
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]