PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15674.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 483aa    MW: 53982 Da    PI: 6.3583
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15674.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1644.3e-2075153182
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                 +fYn+YA+ +GF+vrk+  ++sk +g++++r+f+Cs+eg +++++ +    +++r+etr gC a++ v+++ dgk++vt+ +
  KHN15674.1  75 RFYNKYARLLGFNVRKDWINRSKVHGQVVSRKFTCSQEGWKDKRDAN---VKKHRKETRSGCLAHMIVNRQPDGKYQVTEYK 153
                 5******************************************9998...889999***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1775154IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.138163199IPR007527Zinc finger, SWIM-type
SMARTSM005750.0032174201IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDGDQNEFGS VHEGNVDIGP QTSNNLELNV EQNCCSPNVA RASDSQSCPP AANVLSCDTV  60
LGIGTEFESN DHAYRFYNKY ARLLGFNVRK DWINRSKVHG QVVSRKFTCS QEGWKDKRDA  120
NVKKHRKETR SGCLAHMIVN RQPDGKYQVT EYKANTFGHT RQYNVTFNSS DDTVVCSCMK  180
FERVGCLCSH ALKVLDHTNI KVVPSQYILD RWTGDARLGN LREIKQLTMQ GNPNMVVASC  240
YKDLCHRLLK LSVRASESME AYQFSARQLD EVMVGVEKIL ALKAEEGQVI TSSNIDANAS  300
ENEPAEIFLN GHAIEDQDES NRANGGKDRR ATSDRGYLTT MTFNGADSDR ILNVEVSPPN  360
TVVCISSPSS AYVSSHSASP NPILQGMYSF EANQVVHCMY EQTNHVLDHQ SNSNTLQPPN  420
IFSNQQDCPG QSQLLQEPII QSTYHASMPC NNQMRQGIDL DIQNPHSSSF LLYDHRYRSS  480
ESA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239376.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A445F5M00.0A0A445F5M0_GLYSO; Uncharacterized protein
STRINGGLYMA20G29541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.14e-17FAR1-related sequence 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]