PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 550aa MW: 59013.4 Da PI: 5.343 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.8e-09 | 366 | 414 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq KHN15649.1 366 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 414 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.17E-11 | 361 | 418 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-17 | 361 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 363 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 364 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 366 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 369 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MGDKEKFELD RNEDPMSYSS GMHSDWRFGG ANIASSSVAM VGLGNSMNVS RGDLIGSSSC 60 SSASMVDSFG PNYWENPTCS QNLGFCDINV HNNGGSSSTV AIRKDGFGFG RAGQDHHETL 120 EMGWNPANSI LSNGPGMFPH TLSQFPTDSG FIERAARFSC FSGGNFSDMV NSYGIAQSMG 180 LYGARDAIAG HGMKSVTGGQ SQGGDMNVVE ATKDVSPSVE HLVAAKGSPL KSDRRSEGHV 240 ISQDEGKQSL VRPANESDRA ESSDDGGGQD DSPMLEGTSG EPSSKGLNTK KRKRSGQDGD 300 NDKANGAQEL PSEGAEDNYE NQQKGDHQPT STAKASGKNA KLGSQASDPP KEEYIHVRAR 360 RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL 420 SMKLATVNPR LDFNIEGLLA KDILQQRPGP SSALGFPLDM SMAFPPLHPP QPGLIHPVIP 480 NMANSSDILQ RTIHPQLAPL NGGLKEPNQL PDVWEDELHN VVQMSFATTA PLTSQDFDGT 540 GPASQMKVEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 294 | KKRKRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516668.2 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_006573184.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_014629311.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_014629313.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_014629321.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_028232373.1 | 0.0 | transcription factor bHLH49-like | ||||
Refseq | XP_028232382.1 | 0.0 | transcription factor bHLH49-like | ||||
Refseq | XP_028232390.1 | 0.0 | transcription factor bHLH49-like | ||||
Refseq | XP_028232398.1 | 0.0 | transcription factor bHLH49-like | ||||
TrEMBL | A0A0B2Q6P1 | 0.0 | A0A0B2Q6P1_GLYSO; Transcription factor bHLH49 | ||||
TrEMBL | K7K2A6 | 0.0 | K7K2A6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G09400.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7249 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-114 | bHLH family protein |
Publications ? help Back to Top | |||
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