PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15544.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 302aa    MW: 33186.7 Da    PI: 7.3952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15544.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014118140123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k Fs++  L  H++ H
  KHN15544.1 118 FSCNFCKKEFSSSQALGGHQNAH 140
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-7115145No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASSHVLEGC PSEASSISAT SEGISHKPSA EEENNHDEVA KMKEKGVKSE QYQASNSNSR  60
MVLDFVKLSQ DESIRGSKVE LDFFNPMNLG GSPSSRVKNT EGRDENNNEE KSSEAKTFSC  120
NFCKKEFSSS QALGGHQNAH KQERALAKRR QGIDVGAFRN PHFLYYPYHP AHSFYGTYNR  180
ALGVRMESMI HKPSYPSSSL GFRFGQGWSR SQEMLNPSLD RLRIEGLHAN SGIRILGSDT  240
SLRTKDDCGT IGHNIPFLGE SSTNVATKSN PAPLTTVGGV HLKQEARSSP DSSDEIDLSL  300
KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1984470.0AC198447.7 Glycine max cultivar Williams 82 clone gmw2-48a19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028230373.10.0zinc finger protein 1-like
TrEMBLA0A0B2Q6C50.0A0A0B2Q6C5_GLYSO; Zinc finger protein 3
STRINGGLYMA04G15560.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-23C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]