PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15541.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 236aa MW: 26453.1 Da PI: 8.4694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15541.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.4e-11	50	92	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR ++ s+f+ L+el+P++ K + a+++ A++YI++L KHN15541.1 50 TTERQRRVDLSSKFDALKELIPNP-----SKSDRASVVGDAINYIREL 92 57*******************9.....79*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-14	41	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-9	41	97	No hit	No description
PROSITE profile	PS50888	14.094	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-12	44	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-10	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-8	50	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0032440	Molecular Function	2-alkenal reductase [NAD(P)] activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MPALRNDFPF GGAAGGDDIQ DFGNGLVDFT QQEVGKRRGG KRTKQFTSTT TERQRRVDLS 60 SKFDALKELI PNPSKSDRAS VVGDAINYIR ELKRTVEELK LLVEKKRLEK QRVMMRHKVE 120 TEGESSNLDP AEYSESLRSS WIQRKTKDTE VDVRIVDNEV TIKLVQRKKI DCLVHVSHLL 180 DQLNLDLQHV AGGHIGDFCS YLFNTKICEG SSIYASAIAN KLIQVMDTSL AAASLA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15541.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-102	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548659.2	1e-173	transcription factor bHLH91
Refseq	XP_014624034.1	1e-173	transcription factor bHLH91
Refseq	XP_028206900.1	1e-173	transcription factor bHLH91-like
Swissprot	Q8GX46	9e-67	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A0B2Q1R9	1e-174	A0A0B2Q1R9_GLYSO; Transcription factor bHLH91
TrEMBL	A0A445GG64	1e-172	A0A445GG64_GLYSO; Transcription factor bHLH91 isoform A
TrEMBL	K7MG35	1e-172	K7MG35_SOYBN; Uncharacterized protein
STRING	GLYMA16G12132.1	1e-173	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14498	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	7e-51	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]