PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 344aa MW: 39761.3 Da PI: 10.7532 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.8 | 5.6e-20 | 16 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+ t ++v++ g l++p+kf++++g+ + + tl l++++g +W++ l +k++g+++++kGWkeF++ + L g +vF+ d +s f v++f+ KHN15514.1 16 FFKIITAHNVHE-GKLMIPNKFVKKYGK--RLQNTLFLKTPNGAEWKMIL--KKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRWDVTSHF--QVHIFD 106 788886655555.56***********94..5888****************..*******************************6655666..999997 PP | |||||||
2 | B3 | 69.3 | 5.1e-22 | 213 | 311 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f++v+ + + +++g l lp kf+++h ++ k + + ++l+ +sgr W k+++ k++ ++ ++ W+ Fvk+n+Lk+gD+++F+l++ ++ +++v++fr KHN15514.1 213 FLTVMHRTHISSHGSLNLPMKFCRSHlDLHK-KRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTKLTFLVHIFR 310 778888899999**************85554.5569***************999999999999***********************99**********9 PP S CS B3 99 k 99 + KHN15514.1 311 E 311 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-26 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-26 | 14 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-22 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 14.015 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-20 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-17 | 16 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-23 | 204 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-24 | 208 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.35E-25 | 211 | 310 | No hit | No description |
SMART | SM01019 | 6.0E-18 | 213 | 312 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.283 | 213 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-20 | 213 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAATFPQQLL VKPIHFFKII TAHNVHEGKL MIPNKFVKKY GKRLQNTLFL KTPNGAEWKM 60 ILKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRWDVTSHF QVHIFDLSAL EIEYPTEIIK 120 GKTASNRKGN ESPGDEHLEC HRSGQKRKVN SVEFLQQCQM RSRKCVKVEN TMILPRQALH 180 HTATKCKGKS KAMDNQVTAL DRASSFKSCN PFFLTVMHRT HISSHGSLNL PMKFCRSHLD 240 LHKKRRLISL QVLSGRIWPA KYQIHKQKTA IRFKLSWNAF VKDNNLKVGD VCIFELVHGT 300 KLTFLVHIFR ETDSSNCSTS QESGQMRAAC QSQRKELKTI TATK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551329.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_028213212.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A0B2Q684 | 0.0 | A0A0B2Q684_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | K7MSG4 | 0.0 | K7MSG4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G30790.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-35 | B3 family protein |
Publications ? help Back to Top | |||
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