PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15491.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 1782aa MW: 199412 Da PI: 5.2874

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15491.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	1e-18	47	102	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk KHN15491.1 47 PKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 102 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-19	26	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	33	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	43	103	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	45	107	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-16	47	102	IPR001356	Homeobox domain
CDD	cd00086	9.96E-15	48	102	No hit	No description
PROSITE profile	PS50827	16.1	557	616	IPR018501	DDT domain
SMART	SM00571	4.3E-20	557	616	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	559	613	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	739	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.9E-8	945	987	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-12	1125	1197	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1782 aa Download sequence Send to blast
MEGEGCSEGE NNRKRGGSDD DSNENNNNNN NGSSGKIVNS NEGQSKPKRQ MKTPFQLETL 60 EKAYAVDNYP SETMRVELSE KLGLSDRQLQ MWFCHRRLKD KKDLPSKKPP RKVLAEPLPD 120 SPRDDPRLSL ELANEYGSGS GSGSSPYARV EPLNVVPRCV PGYYESPQAK LELRAIACVE 180 AQLGEPLRDD GPILGLEFDP LPPDAFGAPI AAVTEQQKLP SFAYDSKIYE RHDARTNKAL 240 ARTFRDNQFL PNKSGIRSDA SGQFSQSHLH DPIEGFVRNP PFAHGNEHLP RIHATKGHSS 300 RVRLLSQQDK QLIPYQSPSR DDDAAPQREL YPNIANAGKN SHSTGHQIVG PENLHALPSV 360 QVLHNNATWI EKKRKSDDAH DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK 420 EEERLMRERQ REEERARREQ KREMERREKF LLKENLKAEK TRQREELRKE REAERRKAAL 480 EKATARRMAK ESMELIEDEQ LEMMELAASS KGFSSIVHLD FDTLQHIESF RDSLCVFPPK 540 SVKLRKPFAI KPWINSENNV GNLLMVWRFL INFADVLELW SFTLDEFVQA FHDYDSRLLG 600 EIHVSLLKVI IKDIEDVART PSTGLGANQN GAANTGGGHP EIVAGAYAWG FDIRNWHKHL 660 NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRS CEDIISTLRN GSAAENAVAK 720 MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP 780 EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SEARKKIQIF ENGFLAGEDA 840 DDVERGESES DEIDEDPEVD DLVNPTSANK TSEQCDDFSS NGKENLGHNV ELQGEFDKNL 900 PCFPESGSKN ADAPIAVTGQ SGACEDLDVG NLGEDNMEID ERKPGESWVQ GLAEEEYSDL 960 SVEERLNALA VLVGVANEGN SIRVVLEDRL EAANALKKQM WAEAQVDKVR LKDDTFSKSD 1020 FPSINGNKVE IQYSCPVTEG KQSPLLGINI GNNINNSVPS PSIAENHKAA SGSQSLSVEK 1080 HSSVQDLCTG PDNPQAQSFV QYSKRSRSQW KSYISHMAEE MYVYRSLPLG QDRRRNRYWQ 1140 FVASASSNDP GSGRIFVEYL DGNWRLIDTE EAFDVLLNSL DSRGIRESHL RLMLQKVEIS 1200 FKENVRLNTQ CSKIGSIGET CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDTSETSSSF 1260 KIELGKSESD KKSALRRYQD FQKWMWKECY NSPILCAMKY GKKRCKPQVV ICDICLNPYF 1320 FEDSHCSGCH QTFSSNSGFS FSKHAFQCGD KLSKNICILD SSLPLRTRLL KAMLAFIEVS 1380 VPPEAFQSNW TEDIRRHWSV KLSKSSSVEE LLQILTLLER ALKRDFLSST FSTTGEQLGL 1440 NSMSKSAAQT STDPESVAVL PWVPLTTSAA SLRLLEFDAS IVYVPHEKPE PCEEKEDRVY 1500 MKLPSRYNPS KSSKAAEAAD LDHDEFMKVK SASVKIVQSN NKRGRGSRDK GRGKKLSKTK 1560 QNTGHRGAKV AGNASQRIKQ QEVGSQGQAG GRGRRTVRKR RVGKKAVEDL LLGHRGATHS 1620 SSIGRESLRS MDEDWDDEKA SPVTPIHMGA ANNSNSIEEA ESDDNVQAME SDDNVQAMES 1680 DDNEQAAESD DNGQAVEYDQ GNWEIGFNGA PSRWSRDLVG MSDDDVEASE DDDDNDNVIG 1740 IENNGEEDSE ADAMSEEGSD GTANRIVNEE SSESDVSEDS SD

Sequence ? help Back to Top

Protein Sequence Length: 1782 aa Download sequence Send to blast

MEGEGCSEGE NNRKRGGSDD DSNENNNNNN NGSSGKIVNS NEGQSKPKRQ MKTPFQLETL  60
EKAYAVDNYP SETMRVELSE KLGLSDRQLQ MWFCHRRLKD KKDLPSKKPP RKVLAEPLPD  120
SPRDDPRLSL ELANEYGSGS GSGSSPYARV EPLNVVPRCV PGYYESPQAK LELRAIACVE  180
AQLGEPLRDD GPILGLEFDP LPPDAFGAPI AAVTEQQKLP SFAYDSKIYE RHDARTNKAL  240
ARTFRDNQFL PNKSGIRSDA SGQFSQSHLH DPIEGFVRNP PFAHGNEHLP RIHATKGHSS  300
RVRLLSQQDK QLIPYQSPSR DDDAAPQREL YPNIANAGKN SHSTGHQIVG PENLHALPSV  360
QVLHNNATWI EKKRKSDDAH DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK  420
EEERLMRERQ REEERARREQ KREMERREKF LLKENLKAEK TRQREELRKE REAERRKAAL  480
EKATARRMAK ESMELIEDEQ LEMMELAASS KGFSSIVHLD FDTLQHIESF RDSLCVFPPK  540
SVKLRKPFAI KPWINSENNV GNLLMVWRFL INFADVLELW SFTLDEFVQA FHDYDSRLLG  600
EIHVSLLKVI IKDIEDVART PSTGLGANQN GAANTGGGHP EIVAGAYAWG FDIRNWHKHL  660
NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRS CEDIISTLRN GSAAENAVAK  720
MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP  780
EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SEARKKIQIF ENGFLAGEDA  840
DDVERGESES DEIDEDPEVD DLVNPTSANK TSEQCDDFSS NGKENLGHNV ELQGEFDKNL  900
PCFPESGSKN ADAPIAVTGQ SGACEDLDVG NLGEDNMEID ERKPGESWVQ GLAEEEYSDL  960
SVEERLNALA VLVGVANEGN SIRVVLEDRL EAANALKKQM WAEAQVDKVR LKDDTFSKSD  1020
FPSINGNKVE IQYSCPVTEG KQSPLLGINI GNNINNSVPS PSIAENHKAA SGSQSLSVEK  1080
HSSVQDLCTG PDNPQAQSFV QYSKRSRSQW KSYISHMAEE MYVYRSLPLG QDRRRNRYWQ  1140
FVASASSNDP GSGRIFVEYL DGNWRLIDTE EAFDVLLNSL DSRGIRESHL RLMLQKVEIS  1200
FKENVRLNTQ CSKIGSIGET CVKNEADETD SSPDRHTGSD SPSSTLCGLN SDTSETSSSF  1260
KIELGKSESD KKSALRRYQD FQKWMWKECY NSPILCAMKY GKKRCKPQVV ICDICLNPYF  1320
FEDSHCSGCH QTFSSNSGFS FSKHAFQCGD KLSKNICILD SSLPLRTRLL KAMLAFIEVS  1380
VPPEAFQSNW TEDIRRHWSV KLSKSSSVEE LLQILTLLER ALKRDFLSST FSTTGEQLGL  1440
NSMSKSAAQT STDPESVAVL PWVPLTTSAA SLRLLEFDAS IVYVPHEKPE PCEEKEDRVY  1500
MKLPSRYNPS KSSKAAEAAD LDHDEFMKVK SASVKIVQSN NKRGRGSRDK GRGKKLSKTK  1560
QNTGHRGAKV AGNASQRIKQ QEVGSQGQAG GRGRRTVRKR RVGKKAVEDL LLGHRGATHS  1620
SSIGRESLRS MDEDWDDEKA SPVTPIHMGA ANNSNSIEEA ESDDNVQAME SDDNVQAMES  1680
DDNEQAAESD DNGQAVEYDQ GNWEIGFNGA PSRWSRDLVG MSDDDVEASE DDDDNDNVIG  1740
IENNGEEDSE ADAMSEEGSD GTANRIVNEE SSESDVSEDS SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	102	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15491.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028241100.1	0.0	homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A0B2Q1M0	0.0	A0A0B2Q1M0_GLYSO; Homeobox protein 10
STRING	GLYMA07G32180.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]