PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15338.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 790aa    MW: 90207.6 Da    PI: 9.2852
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15338.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-095736151153
                 HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  +e L ++F++n  p ++ +  L+k+lgL+ ++V+ WF+N R+
  KHN15338.1 573 AVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARY 615
                 5789*************************************97 PP
2PHD39.61.2e-13307362151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ C+   +  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  KHN15338.1 307 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 362
                 699999954445********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.57E-14299364IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-12304363IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638305362IPR019787Zinc finger, PHD-finger
CDDcd155043.67E-29307359No hitNo description
SMARTSM002493.8E-9307360IPR001965Zinc finger, PHD-type
PfamPF006281.2E-10307362IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590308359IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.2E-10552614IPR009057Homeodomain-like
PROSITE profilePS5007111.191560620IPR001356Homeobox domain
SMARTSM003891.2E-6562624IPR001356Homeobox domain
SuperFamilySSF466898.13E-9563626IPR009057Homeodomain-like
CDDcd000863.36E-7568615No hitNo description
PfamPF000466.8E-7573615IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
QLCNKKVIIR YNTTQQRKSL TVKRNKRSSS TRSLPLPVML REQPHRHCFR AIQSSDLYPS  60
FLFHCRGDTE SINMRDVNNL NNKGSGKSSY SQEQTKSKLV SSKFKTSSTK RQEKKHKVRS  120
KSHKHRAGTS KSKKTVTHSS VEAPLEDSSN KKVIIRKYRH KTDGKSSQML SSTKLEGGKN  180
SHSSGIEGND VDGEAKIKKR KRRKKKRQRN NIDVDDASRL RRRTRYLLIK MKLEQNLIDA  240
YSGEGWKGQS REKIRPEKEL LRAKKQILKC KLSIRDAIHQ LDSLSSVGSI EDSAIAPDGS  300
VYHENIFCAN CKLHEAFPDN DIILCDGTCN RAFHQRCLNP PLDTENIPPG DQGWFCKFCE  360
CKIEILEATN AHLGTQFSLD SNWQDVFKEE AAMPDGDIAL LNPEEEWPSD DPEDDDYNPE  420
RKEDNHNFDT EGADENASND STSCSSLLSL NGECPPVDEG ICHEYYSVNS CLDSDESGEI  480
ACGPRQRKAV DYKKLYDEMY GKDAPPCEQM SEDEDWGPGK RKRREKESDA VNTLMTLHES  540
ENKHSDNEKN DRTREGSSGI QIRRSCFRIP LDAVEKLRQV FAENELPPRS VKDSLSKELG  600
LDPEKVSKWF KNARYLALKT RRYQSEGEQL QSFTSKITKD SISQNEEKDE LLKSKVSKIT  660
VIHSKKDGKN ITGKEKNKLS NILLKKRQQK ISPPLARENG NKDSMEISND VKLKKLLKKR  720
KRGVNIIFEG DSQAAELEFE RLGKVKMKLD SMEQKLNEVQ NCRAKGSNEL YLNEPSIIYV  780
PTAQLREKIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109116KRQEKKHK
2197202KKRKRR
3197204KKRKRRKK
4198203KRKRRK
5198206KRKRRKKKR
6200206KRRKKKR
7201206RRKKKR
8203208KKKRQR
9520525RKRREK
10712720LKKLLKKRK
11714720KLLKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15338.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979340.0BT097934.1 Soybean clone JCVI-FLGm-16O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204411.10.0pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487851e-156PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0B2Q5K20.0A0A0B2Q5K2_GLYSO; Pathogenesis-related homeodomain protein (Fragment)
STRINGGLYMA15G17956.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-155pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]