PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN15192.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 549aa MW: 60255.7 Da PI: 9.5898

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN15192.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	265	315	2	55
HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq KHN15192.1 265 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 315 889***********9768*****9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-21	260	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	261	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.887	263	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-12	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.64E-14	265	319	No hit	No description
SMART	SM00353	8.4E-11	269	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MELPQACPLG TEGRKPTHDF LSLYSNSTAQ QDPRPPSQGS YLKTHDFLQP LERVETKASA 60 KEEATDEISS VVQKPRSPSV EHLLPGGIGT YSISHISYVN NNNNNNQRVP KPETSSLYGR 120 QATSTDRNEE NSNCSSYTSS GFTLWEESSG KRGKTGKENN AGEKPSLGES AAKLGQWTTT 180 ERTSQSFSNN RHGSFSSRSS SQTTGLKNQS FIEMMKSARD SAQNEVLESE ETFFLKKEPS 240 SNTQRAELLV KVDGKSTDQK PNTPRSKHSA TEQRRRSKIN DRQFQMLREL IPHSDQKRDK 300 ASFLLEVIEY IHFLQEKVHK YEGSFQGWSN EPERLMPWRN NDKPAESFQP RGTDNGSSPS 360 PTIPGSTQNV ESGLSTATTS KTMDHQAGKM NKAFPIPIPS QLNFFTPTQI GGPGGVVSQL 420 THRSASDAEN TKYQPSVECQ TMTATNEKLK AKELTIEGGA ISISSVHSKG LLHTLTHALQ 480 SSGVDLSQAS ISVQIELGKQ ANIRSNVPVS VCGAKDGAVP SNNQKMMRSR VASSGKSDQA 540 VKKLKTCRS

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MELPQACPLG TEGRKPTHDF LSLYSNSTAQ QDPRPPSQGS YLKTHDFLQP LERVETKASA  60
KEEATDEISS VVQKPRSPSV EHLLPGGIGT YSISHISYVN NNNNNNQRVP KPETSSLYGR  120
QATSTDRNEE NSNCSSYTSS GFTLWEESSG KRGKTGKENN AGEKPSLGES AAKLGQWTTT  180
ERTSQSFSNN RHGSFSSRSS SQTTGLKNQS FIEMMKSARD SAQNEVLESE ETFFLKKEPS  240
SNTQRAELLV KVDGKSTDQK PNTPRSKHSA TEQRRRSKIN DRQFQMLREL IPHSDQKRDK  300
ASFLLEVIEY IHFLQEKVHK YEGSFQGWSN EPERLMPWRN NDKPAESFQP RGTDNGSSPS  360
PTIPGSTQNV ESGLSTATTS KTMDHQAGKM NKAFPIPIPS QLNFFTPTQI GGPGGVVSQL  420
THRSASDAEN TKYQPSVECQ TMTATNEKLK AKELTIEGGA ISISSVHSKG LLHTLTHALQ  480
SSGVDLSQAS ISVQIELGKQ ANIRSNVPVS VCGAKDGAVP SNNQKMMRSR VASSGKSDQA  540
VKKLKTCRS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN15192.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-105	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028231260.1	0.0	transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	1e-126	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A445KIJ1	0.0	A0A445KIJ1_GLYSO; Transcription factor BIM1 isoform A
STRING	GLYMA05G07490.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-123	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]