PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15151.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 267aa    MW: 30452.9 Da    PI: 9.9971
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15151.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1419.2e-44101563135
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssas.nsssg 88 
                  k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt++WLl+qak +ik+l +         s+ss sec    + ++ ++s++ n++++
  KHN15151.1  10 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREktsvggakSASSTSECegvsSLDEVVVSGGvNEEQE 108
                 69*************************************************************999997765555577755542222233333333333 PP

         TCP  89 kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                 ++   ++  + ++  ++++++ ++kesr+kar+rarertrekmr++ +
  KHN15151.1 109 RETVPNMkRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRV 156
                 4444444234444444455566777*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-4410153IPR005333Transcription factor, TCP
PROSITE profilePS5136933.3581169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.072133150IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEHTPRKRSS KRDRHSKINT ARGLRDRRMR LSLEVAKRFF GLQDMLGFDK ASKTVDWLLN  60
QAKGEIKQLG REKTSVGGAK SASSTSECEG VSSLDEVVVS GGVNEEQERE TVPNMKRRTN  120
KVCRKSAFNP IDKESREKAR ERARERTREK MRTRRVLADA SNLNRLSSWN PFETVEDSAG  180
TTHQSQSVNH PSLDVHLPEA DQEPSSHNAK EHWGENMAHE DNSLAIMNKW SPTMMFNSLH  240
NSGVLQEHQF AEFQSLGKPW EAYSNHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525648.20.0transcription factor CYCLOIDEA
RefseqXP_028231212.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A445KIP30.0A0A445KIP3_GLYSO; Transcription factor TEOSINTE BRANCHED 1
TrEMBLK7KNH40.0K7KNH4_SOYBN; Uncharacterized protein
STRINGGLYMA05G07943.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-21TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]