PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 134aa MW: 15432.7 Da PI: 9.7439 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139 | 2.8e-43 | 17 | 132 | 3 | 118 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 GfrFhP+deel+v+yL++kv++++l++ ++i+e+d+y+++Pw+Lp+k+ +e+ewyfF++rd+ky++g r+nrat+sgyWk tg+dk+++++ + + + KHN15010.1 17 LGFRFHPSDEELIVHYLRNKVTSSPLPA-SFIAEIDLYNYNPWELPSKALFGEDEWYFFTPRDRKYPNGMRPNRATTSGYWKPTGTDKPIFTScGMKSI 114 6***************************.89***************87778999**************************************977788* PP NAM 101 glkktLvfykgrapkgek 118 +kk Lvfykgr pkg+k KHN15010.1 115 TVKKALVFYKGRPPKGSK 132 ****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-47 | 7 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.749 | 15 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-20 | 18 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MLIQKSNSLL DLDSTFLGFR FHPSDEELIV HYLRNKVTSS PLPASFIAEI DLYNYNPWEL 60 PSKALFGEDE WYFFTPRDRK YPNGMRPNRA TTSGYWKPTG TDKPIFTSCG MKSITVKKAL 120 VFYKGRPPKG SKID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 18 | 134 | 18 | 132 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 8e-88 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553546.2 | 6e-77 | NAC transcription factor 25 isoform X2 | ||||
Refseq | XP_028215986.1 | 6e-77 | NAC domain-containing protein 2-like | ||||
Swissprot | Q8GY42 | 2e-60 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0B2Q100 | 8e-95 | A0A0B2Q100_GLYSO; NAC domain-containing protein 29 | ||||
STRING | GLYMA19G36421.1 | 2e-76 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 9e-63 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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