PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14976.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 609aa    MW: 70576.1 Da    PI: 7.1835
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14976.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.55.8e-101285289
        FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                +Y +YA+++GF + +++skk  r+g+++   +vCs   +++  +             +  C a+++++++kdg++++++  l H+Hel
  KHN14976.1 12 YYTKYANQMGFGIMTRTSKKG-RDGKVKYLILVCSGITRSDAAR-------------KQYCAARINLTLRKDGTYRINSATLGHSHEL 85
                8*************9999887.8888********8655444433.............569***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-61285IPR004330FAR1 DNA binding domain
PfamPF105512.3E-27187281IPR018289MULE transposase domain
PROSITE profilePS5096610.348471509IPR007527Zinc finger, SWIM-type
PfamPF044345.0E-6483506IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6484511IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MVFSSEAEAR LYYTKYANQM GFGIMTRTSK KGRDGKVKYL ILVCSGITRS DAARKQYCAA  60
RINLTLRKDG TYRINSATLG HSHELGSHHL LSSDIDTRGK RTLDQEVVDM GVKRISDKNE  120
CRYYLQKERH LIGENGDGEA LQKYLVRMQE QDRNFFYVID LDDFFCVRNV FWADGKSRAA  180
YESFGDVVIV DTTCLSNRYK VPLVTFVGVN HHGQSVLFGC GLLSYEDSES FAWLFQSLLH  240
CMSDVPPQGI ITDHCCKTMQ KAVETVYPST RHRWCLSNIM EKLPQLIHGY ANYKSLRDHL  300
QNVVYDTPTI SEFEQKWKKI VEDFDLKDNK WLKELFLERH RWAPSFVRGE FWAGMSINPH  360
NESMHAFFDG YVSRLTTLKQ FVDQYDNALQ YKAEKEYVAD IHSSSNSQAC VTKSPIERQF  420
QAAYTHAKFL EVQHEFVGKA DCNVSVASDD GSIFHYNVIE DGIIDDKPKE SVVEVIYNRV  480
DCDVKCSCHL FEFRGILCRH SLAVLSQERV KEVPCKYILD RWRKNIRRKY AYIKTSYGVQ  540
HFEPHVQRLE LLCNQFNSIA AVAAEFEDTS SFVKDNLCNL KEKLEAWTTL LRNSSQVDVE  600
KCNYMMDWE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604361.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_028217084.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A0B2Q0370.0A0A0B2Q037_GLYSO; Protein FAR1-RELATED SEQUENCE 6
STRINGGLYMA19G32051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-95FAR1-related sequence 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]