PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14771.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 562aa    MW: 62105.8 Da    PI: 6.7661
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14771.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-12196252155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d s++   k+ k  + g ++ +e+Aa+a++ a++k++g
  KHN14771.1 196 SIYRGVSRHRWTGRYEAHLWDNSSRRegKTsKGKQ-GGYDKEEKAARAYDLAALKYWG 252
                 57*******************77744566668888.559999**************98 PP
2AP248.32.6e-15296347155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +    ++k  +lg+f t eeAa+a++ a+ k++g
  KHN14771.1 296 SIYRGVTRHHQHGRWQARIGRVA---VNKDLYLGTFNTQEEAAEAYDIAAIKFRG 347
                 57****************88742...46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-17196262No hitNo description
SuperFamilySSF541719.15E-13196262IPR016177DNA-binding domain
PfamPF008471.0E-8196252IPR001471AP2/ERF domain
SMARTSM003806.6E-19197267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-11197261IPR001471AP2/ERF domain
PROSITE profilePS5103217.135197261IPR001471AP2/ERF domain
PRINTSPR003673.0E-6198209IPR001471AP2/ERF domain
PfamPF008474.3E-10296347IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-17296356IPR016177DNA-binding domain
CDDcd000183.30E-24296355No hitNo description
SMARTSM003803.6E-32297361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18297355IPR001471AP2/ERF domain
PROSITE profilePS5103218.795297355IPR001471AP2/ERF domain
PRINTSPR003673.0E-6337357IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MASMNWLDFS LSPQELPSQP LNDEEDHSQT VTPLLGFNSH EISVTECFDL SSFALVEAPN  60
RNNTHHITPL DYWNTKGLGT SCSSNQNMDN NQQHPKLENF LLEKPATGGG GCPKNTNSIG  120
LSMIKTWLRK QMSSQSDAAN TSLSMSTTRV SESGTVALPL LTAGEESSSS KSKQSGILNV  180
DTVSRKSADT FGKRTSIYRG VSRHRWTGRY EAHLWDNSSR REGKTSKGKQ GGYDKEEKAA  240
RAYDLAALKY WGATTTTTNF PIIHYEKELE EMKNLTRQEY VASLRRKSSG FSRGASIYRG  300
VTRHHQHGRW QARIGRVAVN KDLYLGTFNT QEEAAEAYDI AAIKFRGLKA VTNFDMNRYD  360
VKSILESSTL PIGGAAKRLK DADEQVDLTI MDPQTPHVDS NINILGASHH SLALHQPQPY  420
SHLNYTYGQK FWIDSASVDN NNNSSGSNYV IYGGGDGYAI PMATPTFNIA DDDDVVQNSR  480
SNGLEHNDVK MLGYENVLSS STDPYHARDL CYLSQPASGD TVKGSAYDAC NTWVPFVIPS  540
TLALRHTNDL CSGASPFTLL HE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618314.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ41e-127BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A445INQ70.0A0A445INQ7_GLYSO; AP2-like ethylene-responsive transcription factor BBM
STRINGGLYMA10G31440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  5. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  6. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  7. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  8. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  9. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]