PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN14566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | YABBY | ||||||||
Protein Properties | Length: 216aa MW: 24177.3 Da PI: 5.1453 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 198.7 | 2.5e-61 | 6 | 162 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ +eq+Cyv+C+fC til+vsvPs+sl++vvtv+CGhCts+lsvn++kas +lla+ shl+ ++ ++e++ +++ ++ ++as + KHN14566.1 6 HLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASfvpfHLLASLSHLE--------PKESSSEQDANKTLKR-HNASMMT 95 7899**********************************************99977778888888843........3333334444333333.3333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 s + +e++ +p v++PPekrqr Psayn+fikeei+r+ka+nPd++hreafs+aaknWa fP+ KHN14566.1 96 YS---DCEEEDVIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNWANFPPT 162 33...44666777877789*************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-61 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-10 | 109 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-6 | 112 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVECG FCATILMVSV PSSSLSMVVT VKCGHCTSVL SVNMMKASFV 60 PFHLLASLSH LEPKESSSEQ DANKTLKRHN ASMMTYSDCE EEDVIPMSNV VNKPPEKRQR 120 TPSAYNCFIK EEIKRLKAEN PDMAHREAFS TAAKNWANFP PTQCKEDEES CSSQTDQHVD 180 LDSQVDPNAV VNEEEGQGLR GRKVPKNSIL ERTSFE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN14566.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 9e-55 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028229181.1 | 1e-161 | axial regulator YABBY 4-like isoform X2 | ||||
Swissprot | Q9LDT3 | 2e-71 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0B2PZ20 | 1e-160 | A0A0B2PZ20_GLYSO; Axial regulator YABBY 4 | ||||
TrEMBL | A0A445LY33 | 1e-160 | A0A445LY33_GLYSO; Axial regulator YABBY 4 isoform A | ||||
STRING | GLYMA01G03580.2 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 8e-62 | YABBY family protein |
Publications ? help Back to Top | |||
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