PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14396.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 313aa    MW: 34166.9 Da    PI: 7.0557
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14396.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.1e-334296155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  KHN14396.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.5693999IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-323997IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-244297IPR006447Myb domain, plants
SuperFamilySSF466891.27E-164298IPR009057Homeodomain-like
PfamPF002492.0E-74495IPR001005SANT/Myb domain
PfamPF143792.2E-15137182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MYSRLIHPHD GIVTQDDLQG AASNLSHAHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT  60
QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDVGEGCKD GSYLLESPGA  120
DNSSPKLPTS DTNEGYEIKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLERAC  180
KMLADQFIGA TVIDTDSQKF QGIGSKAPRG TLVDPLGFYS MPSTEVAGVN VPEEEIPLSL  240
PPQRADCSTE SCLTSHESSG GLALEGSPGE GKRRMLGMDS MAAPLIWSEA KMRTQAINVA  300
QGNLPQGITR YGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14396.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936500.0BT093650.1 Soybean clone JCVI-FLGm-24E4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241456.10.0MYB-CC domain-containing transcription factor PHR24
RefseqXP_006597012.10.0MYB-CC domain-containing transcription factor PHR24 isoform X1
RefseqXP_028204940.10.0protein PHR1-LIKE 2-like isoform X1
SwissprotQ94A571e-63PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A445GSF90.0A0A445GSF9_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBLC6T8560.0C6T856_SOYBN; Uncharacterized protein
STRINGGLYMA15G12930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.15e-66G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]