PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14238.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 449aa    MW: 49138.2 Da    PI: 8.2277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14238.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14262307454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  hn  Er+RRd+iN+++  L+el+P++      K +Ka++L  A+eY+k L
  KHN14238.1 262 VHNLCERKRRDKINKRMRILKELIPNC-----NKTDKASMLDDAIEYLKTL 307
                 5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-18255316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19256319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.111258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-15261312No hitNo description
PfamPF000103.0E-12262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAAEKMPDST KPGMTRSTSY LDSIYGKGSL ELVWENGQLH VQQGGSSSTS SVVTRMTPSC  60
EGSFNAKSAR LSSLYSLMDF PVQRDSALDN SQPNSHQSND QNSGKFAKAA NSSSKGLDRS  120
LVINSPKGSP GRQKNPLNSD TSNMVPRSEE TTPPDEQSEA VGHDSIHGSR GQYFNQTSSS  180
ARHRAKGKAN DTKQKYCDEG LLESSSLCSI GASNNRNVCS RTHDDIDDST YLSNNDEEPE  240
DVVKEKPAWE GTGVKRSRNA EVHNLCERKR RDKINKRMRI LKELIPNCNK TDKASMLDDA  300
IEYLKTLKLQ LQMMSMGAGF CMPFMMLPNA AHHMMNTPHL HQLMGLGMGF RPGTAMPCSL  360
PQFPITPLHG ITDNRVHMFG FPNQVPPMPI SHAPFIPMLG NPSTQPTPLA TSTNINLAEN  420
PASSQLTTLM ASSPKNLFIS GQAEYATKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERKRRD
2267272RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958540.0BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183302.10.0transcription factor PIL1-like isoform X1
TrEMBLA0A0B2Q2Q70.0A0A0B2Q2Q7_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
STRINGGLYMA10G27910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.14e-38phytochrome interacting factor 3-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]