PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14233.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 482aa    MW: 52730.2 Da    PI: 6.8329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14233.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.1e-30257315259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+ +d++v+++tYeg+Hnh+
  KHN14233.1 257 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVQRCMDDKTVLITTYEGNHNHP 315
                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-32241317IPR003657WRKY domain
SuperFamilySSF1182901.57E-27249317IPR003657WRKY domain
PROSITE profilePS5081129.964251317IPR003657WRKY domain
SMARTSM007742.4E-35256316IPR003657WRKY domain
PfamPF031061.7E-26258315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MENHHQMQQP NREFTILRST DFLRQNLNLY PTTVNTGEHA DPSIKEVDFF SSRSPTKNSD  60
TDNSSPEEPH DHRHTNMAKD DGSPTLFNDQ LVNTALNLSP SAGLSRSAAN DENIETLLTT  120
LQRESLRLKE ENCKLRTMLD QITKNYNQLQ LFIALQKQKQ CQKMETNLNG MMFGQHLLDP  180
RGPFTKLDAQ VAPFPDDKSG QRGLPETDPV EDVPEQSTSQ SWGSSKSPKF EESNSSELPL  240
KKTRVSVRAR SEAPLISDGC QWRKYGQKIA KGNPCPRAYY RCTMAVGCPV RKQVQRCMDD  300
KTVLITTYEG NHNHPLPPSA IVMANSTSAA ASMFLSSSCS TSNNNEALSN TVGVFSSMPY  360
IPMATLSTSA PFPTITLDMT TNPSALTSPL PLHATTFPQL LGHPVIFPHK MPHPLLGQQQ  420
PLFTTETMSA AIASNPNFTI ALAAAISSII GAPRGNDGIN NNSSNGGSDL PLNGTSMLPG  480
ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21247317877Probable WRKY transcription factor 4
2lex_A1e-21247317877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195520.0EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183343.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0B2Q2N00.0A0A0B2Q2N0_GLYSO; Putative WRKY transcription factor 42
STRINGGLYMA10G27860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-76WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]