PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN14210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 36660.9 Da PI: 8.4328 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 175 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H KHN14210.1 175 FYCDLCNKQYKLAMEFEAHLSSydH 199 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 1.8E-18 | 64 | 109 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.802 | 66 | 111 | IPR000467 | G-patch domain |
Pfam | PF01585 | 2.7E-16 | 67 | 107 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 2.81E-5 | 173 | 209 | No hit | No description |
Pfam | PF12171 | 1.8E-5 | 175 | 202 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 177 | 199 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEYRRTSGRQ ETGGRDRRQS KREQAYQDSL IEDLSQDFRL PINHRPTENV DLDNVEQASL 60 DTQITSSNIG FKLLQKMGWK GKGLGKDEQG IIEPIKSGIR DPRLGIGKQE EDDFFTAEEN 120 IQRKKLDVEL EETEEHVKKR EKAAYSIYAC LLTGLVLAER EQKIQTEVQE IRKVFYCDLC 180 NKQYKLAMEF EAHLSSYDHN HRKRFKQMKE MHGSSSRDDR QKREQQRQER EMAKFAQIAD 240 AQKQQRLQLQ QESGSATVPS ESKTATALTD QEQRNTLKFG FSSKGSGSKI TFGAKKQNVA 300 KKQNVPISSI FSNDSDED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN14210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096374 | 0.0 | BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014629465.1 | 0.0 | G patch domain-containing protein 8 isoform X1 | ||||
Refseq | XP_028226434.1 | 0.0 | G patch domain-containing protein 8-like isoform X1 | ||||
TrEMBL | A0A0B2PYJ3 | 0.0 | A0A0B2PYJ3_GLYSO; G patch domain-containing protein 8 | ||||
STRING | GLYMA03G38720.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |
Publications ? help Back to Top | |||
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