PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14203.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 600aa    MW: 65376 Da    PI: 5.8104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14203.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15389435455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+  Lq
  KHN14203.1 389 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLETLQ 435
                 5*************************8.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-19383444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.688385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-19386443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-16388439No hitNo description
PfamPF000108.4E-13389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPLHELYRVA KGKLDDPIEM NNNTTCAVDQ SSVPNNDLFE LIWEKGQISV QGQSSRARVS  60
PNCKTLPSHT PIGYANNAIT TNTRMGKCGN LGAELNEIRR LVPSGEVDLS EEEEDMVMPW  120
FSYGRDDDSL QHGYSTDFFH EPSGVMNELS ASNNFSLLDR RNNCSKIFRD THKHSPFASV  180
RSRVADIAEN NANNVPSGSS CFSSLKMEKQ GPVMCSNNSS TMMNFSHFAK PAAIENIGLA  240
SRSGSVGIKI KSADESTKVE LSRGERPKKP AIHNQDQDVT VSTKGDPSCN EVSKVDQNQT  300
SNIVVGESGN KGHEAVEKGV EPAVVSSSVC SGNGAERGSE DPNQNLKRKS IDTEDSESQS  360
EDVEEESVGV KKEVHARGFG ATRGRSAEVH NLSERRRRDR INEKMRALQE LIPNCNKADK  420
ASMLDEAIEY LETLQLQLQI MSMGSGLYVP AMMLPPGMQH MHAPHMGPFS PIGVGMQMRL  480
GMGMLDANVI ESSRFIQVHP MPMPHAPIFS FPGEPLINPS STLGLMETVD KASSAFGLKD  540
QIPQLVQNTN NGCNSTNQMS TQCEATIGGF EHSTLVLNSG HATSANDRGA SNPSKEDKHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393398ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351800.0AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216907.10.0transcription factor PIF3-like
TrEMBLA0A0B2Q2J80.0A0A0B2Q2J8_GLYSO; Transcription factor PIF3
STRINGGLYMA03G38675.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-57phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]