PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN14177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 517aa MW: 57431.8 Da PI: 8.6468 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.6e-14 | 334 | 379 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn E++RR++iN+++ +L+el+P++ K++Ka++L A++Y+k L KHN14177.1 334 VHNLSEKKRREKINKKMRTLKELIPNC-----NKVDKASMLDDAIDYLKTL 379 5*************************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.71E-15 | 328 | 384 | No hit | No description |
PROSITE profile | PS50888 | 17.492 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-19 | 333 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-12 | 334 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 335 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-16 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MIQKMFDPSR SGMTRSSSHV ASIYDNDFLE LVWENGEVVV RGGSSNRSRK TNEERIHEDA 60 SINKRTRLNP LLYSLEDHFP PQRDSDMSTS HQSNGQDSCG QSSQSKLHEE FANLLKPVSI 120 GNNHLQQCLP SSPLKKQRTV DSTQTPPTPK VNFSNFSIPA VFLKSTTHQG NSATQQTNNH 180 SSPARMEEII EARKVEQSVK ESHGFQKQTS LTVERSTKLP TPPVDEHSEA VGHNCGVLGI 240 HRSQGQLRCD QTSTSEALIR AKAKAYNNNT NMCHEPLLAS SSVCSLGASN DPNLGLRKHE 300 DTETYLSDND GEPEDMVKQD RDGNRVRRIR NPVVHNLSEK KRREKINKKM RTLKELIPNC 360 NKVDKASMLD DAIDYLKTLK LQLQIMSMGN GLWPLMMLPA ATTAHHMNPQ LGMGFRPPQL 420 PIPPSLSAIT DNRLQMFGCF PNQIPPMPAM PHAPFFPIIA NSATQPHLAN TTNLAEHLAA 480 SLHGNATKLA PPSQVSFQQH SCTSTPTLST PFIFPQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 344 | KKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN14177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031129 | 0.0 | KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028226393.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A0B2Q2Z4 | 0.0 | A0A0B2Q2Z4_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform A | ||||
STRING | GLYMA03G38391.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13329 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-29 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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