PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14118.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 671aa    MW: 74928 Da    PI: 6.8391
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14118.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.48.3e-1262806541373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlt 97 
                 lv+lL+ c++a+ s++ +++++++a+l +lasp+g +++ R+ ayfteALa r++r +++++++ ++++++++   +e+++al+l+++v+Pi+kf h+t
  KHN14118.1 280 LVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGtTSISRICAYFTEALAIRVTRLWPHVFHIAAATTSRDMVeDDESATALRLLNQVTPIPKFLHFT 378
                 6899*******************************99**************************9999999887757778899999************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge..rLakfAeelgvpfefnvlvakrledleleeL 194
                  N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+ l+etge  rLa fAe l++pfef++ v++rled++l++L
  KHN14118.1 379 SNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPTHVRITGIGE----SKQDLNETGErqRLAGFAEVLNLPFEFHP-VVDRLEDVRLWML 472
                 ****************************************************....99******96337****************.7************ PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgr 292
                 +vk++E++aVn+v qlh++l++ +s     +++L l++s++P vvvv+eqea+hn++++ +r++++l+yysalfds+ e++lp es  r+k+E++  g+
  KHN14118.1 473 HVKEHETVAVNCVSQLHKTLHD-GSGGA-LRDFLGLIRSTKPSVVVVAEQEAEHNHTRLEARVCNSLKYYSALFDSIeESGLPIESAVRVKIEEM-YGK 568
                 ********************44.44444.689*********************************************9999**************.9** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                 ei+n++aceg+er+erhe++++Wr+++ e+ GF+ ++++e++ +q ++ll++++ + y+v+++       ++l W ++pL++vSaW
  KHN14118.1 569 EIRNIIACEGRERVERHESFGNWRRMMvEQGGFRCMSVTERELSQSQMLLKMYSCESYSVKKQekegATGVTLSWLEQPLYTVSAW 654
                 ************************99935589**********************999***955333344566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.556254631IPR005202Transcription factor GRAS
PfamPF035142.9E-123280654IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSSMSTQR LDLPSCTTAT FTRNNKDHHH  60
HQPLRPVGLS VDQKHIEAKT STCSLKQHIR LPPLAITASA TPLVEESSII NDNNNKSLKK  120
RLAAEHHDDS FAKRKKSSST TECDWFQPDV VETTTLGGFN NNNTSLVSFS SEEQERVCFL  180
PSEVVSHSAP FPLNPWLESC VTKITNFGEG SHRHPHHHHH PHHHNDHASG SVSNASSESQ  240
SLRLNDNVSE HEVGNGSGNP YYHHRKVEAG EEDDHHGFEL VSLLTGCVDA IGSRNVTAIN  300
HFIAKLGDLA SPKGTTSISR ICAYFTEALA IRVTRLWPHV FHIAAATTSR DMVEDDESAT  360
ALRLLNQVTP IPKFLHFTSN EMLLRAFEGK DRVHIIDFDI KQGLQWPSLF QSLASRSNPP  420
THVRITGIGE SKQDLNETGE RQRLAGFAEV LNLPFEFHPV VDRLEDVRLW MLHVKEHETV  480
AVNCVSQLHK TLHDGSGGAL RDFLGLIRST KPSVVVVAEQ EAEHNHTRLE ARVCNSLKYY  540
SALFDSIEES GLPIESAVRV KIEEMYGKEI RNIIACEGRE RVERHESFGN WRRMMVEQGG  600
FRCMSVTERE LSQSQMLLKM YSCESYSVKK QEKEGATGVT LSWLEQPLYT VSAWGPVDAA  660
AGTSSSFSHP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-652716569379Protein SCARECROW
5b3h_D7e-652716569379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118135KKRLAAEHHDDSFAKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14118.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549861.10.0scarecrow-like protein 28
RefseqXP_006600806.10.0scarecrow-like protein 28
RefseqXP_006600807.10.0scarecrow-like protein 28
RefseqXP_028211243.10.0scarecrow-like protein 28
RefseqXP_028211244.10.0scarecrow-like protein 28
RefseqXP_028211245.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0B2Q2B50.0A0A0B2Q2B5_GLYSO; Scarecrow-like protein 28
STRINGGLYMA17G14030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]