PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN14093.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 810aa MW: 90318.8 Da PI: 7.3343

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN14093.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.6e-21	718	798	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ev++Li++r e+++r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y+++k+ +k++ +++pyf+++e KHN14093.1 718 KWKHEEVKKLIDMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEEVKNEKKNK-----KKWPYFEDME 798 7**************************************************************999984.....68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	5.9E-69	20	270	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	2.09E-71	21	435	IPR001279	Metallo-beta-lactamase
SMART	SM00849	7.1E-25	33	230	IPR001279	Metallo-beta-lactamase
Pfam	PF12706	7.5E-11	45	180	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	7.6E-6	378	407	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profile	PS50090	8.618	711	775	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.1E-5	712	777	IPR009057	Homeodomain-like
Pfam	PF13837	6.1E-19	716	800	No hit	No description
CDD	cd12203	3.34E-20	717	778	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MEDSVQCKME EFYEGQDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GIMFPDYDEL 60 GVQKIIPDTT FIRKWKHKIE AVIITHGHED HIGALPWVIP ALDSHTPIFA SSFTMELIRK 120 RLKDHGIFVP SRLKVFRTRK KFMAGPFEVE PITVTHSIPD CCGLVLRCSD GTILHTGDWK 180 IDETPLDGKV FDREALEELS KEGVTLMMSD STNVLSPGRT TSESVVADAL LRNISAAKGR 240 VITTQFASNI HRLGSVKAAA DLTGRKLVFV GMSLRTYLDA AWKDGKSPID PSTLVKAEDI 300 DAYAPKDLLI VTTGSQAEPR AALNLASFGS SHSFKLTKED TVLYSAKVIP GNESRVMEML 360 NRISEIGSTI VMGKNECLHT SGHGYRGELE EVLRIVKPQH FLPIHGELLF LKEHELLGKS 420 TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF ISLGKENLQL MYSDGEKAFG TSSDLFIDER 480 LKIALDGIIV VNMEIFRPQN LDSPVENTLK GKIRITTRCL WLDKGKLLDA LHKAAHAALA 540 SCPVSCPLAH MEKIVSEMLR KMVRKYSGKR PEVIAIAIEN PAAVLANEIN TKLSGKLNVD 600 GMSALRKVVD GHEKENQRTE MQIRDRIDVG GLLPTKDNAI SSGAEDGLSD AEDPNDYFKP 660 FVESSPVEKS IKTNNGYVPR KEKSSPLKDD CSEDTEECNS VNTSDSEPKS SKSAKRNKWK 720 HEEVKKLIDM RGELNDRFQV VKGRMALWEE ISQNLLANGI SRSPGQCKSL WTSLLQKYEE 780 VKNEKKNKKK WPYFEDMERI LADNKTLETK

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MEDSVQCKME EFYEGQDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GIMFPDYDEL  60
GVQKIIPDTT FIRKWKHKIE AVIITHGHED HIGALPWVIP ALDSHTPIFA SSFTMELIRK  120
RLKDHGIFVP SRLKVFRTRK KFMAGPFEVE PITVTHSIPD CCGLVLRCSD GTILHTGDWK  180
IDETPLDGKV FDREALEELS KEGVTLMMSD STNVLSPGRT TSESVVADAL LRNISAAKGR  240
VITTQFASNI HRLGSVKAAA DLTGRKLVFV GMSLRTYLDA AWKDGKSPID PSTLVKAEDI  300
DAYAPKDLLI VTTGSQAEPR AALNLASFGS SHSFKLTKED TVLYSAKVIP GNESRVMEML  360
NRISEIGSTI VMGKNECLHT SGHGYRGELE EVLRIVKPQH FLPIHGELLF LKEHELLGKS  420
TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF ISLGKENLQL MYSDGEKAFG TSSDLFIDER  480
LKIALDGIIV VNMEIFRPQN LDSPVENTLK GKIRITTRCL WLDKGKLLDA LHKAAHAALA  540
SCPVSCPLAH MEKIVSEMLR KMVRKYSGKR PEVIAIAIEN PAAVLANEIN TKLSGKLNVD  600
GMSALRKVVD GHEKENQRTE MQIRDRIDVG GLLPTKDNAI SSGAEDGLSD AEDPNDYFKP  660
FVESSPVEKS IKTNNGYVPR KEKSSPLKDD CSEDTEECNS VNTSDSEPKS SKSAKRNKWK  720
HEEVKKLIDM RGELNDRFQV VKGRMALWEE ISQNLLANGI SRSPGQCKSL WTSLLQKYEE  780
VKNEKKNKKK WPYFEDMERI LADNKTLETK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	3e-87	21	579	19	560	RIBONUCLEASE J
5a0t_B	3e-87	21	579	19	560	RIBONUCLEASE J
5a0v_A	3e-87	21	579	19	560	RIBONUCLEASE J
5a0v_B	3e-87	21	579	19	560	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN14093.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028210979.1	0.0	ribonuclease J-like isoform X2
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A0B2Q290	0.0	A0A0B2Q290_GLYSO; Ribonuclease J
STRING	GLYMA17G13780.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5099	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]