PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14083.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 304aa    MW: 34798.2 Da    PI: 6.8413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14083.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.12.3e-98730374374
        GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLa 166
                 s+e   a++l +e++P ++f+h +aN+++lea+ege+ vH++D+++s    +G QW aL+q+La+R++g    +lRiTgvg       e+l+++ge L+
  KHN14083.1   7 SDEMEEAYRLVYELCPHIQFGHYLANSTVLEAFEGESFVHVVDLGMSlglrHGHQWRALIQSLANRASGERvrRLRITGVGL-----CERLQTIGEELS 100
                 6778899************************************98753333788*************665444*********.....89********** PP

        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                  +A++lg+++ef+v v k+le+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL+++ +l Pkv+v+veq+++hn++ Fl rf+e+l+yys
  KHN14083.1 101 VYANNLGINLEFSV-VNKNLENLKPEDIEVREEEVLVVNSILQLHCVVKESRGALN---SVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYS 195
                 *************9.7********************************88877777...8*************************************** PP

        GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                 ++fdsl++ lp+ + +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+++p++  a+++  ll +kv  +gy+v ee+g+lv+gWk+
  KHN14083.1 196 SIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQSKQWLLKNKV-CEGYTVVEEKGCLVFGWKS 293
                 ****************************************************************987766655554444.6****************** PP

        GRAS 365 rpLvsvSaWr 374
                 rp+v+vS+W+
  KHN14083.1 294 RPIVAVSCWK 303
                 *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.4531284IPR005202Transcription factor GRAS
PfamPF035147.9E-967303IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMPDAASDEM EEAYRLVYEL CPHIQFGHYL ANSTVLEAFE GESFVHVVDL GMSLGLRHGH  60
QWRALIQSLA NRASGERVRR LRITGVGLCE RLQTIGEELS VYANNLGINL EFSVVNKNLE  120
NLKPEDIEVR EEEVLVVNSI LQLHCVVKES RGALNSVLQM IHGLGPKVLV MVEQDSSHNG  180
PFFLGRFMES LHYYSSIFDS LDVMLPKYDT KRAKMEQFYF AEEIKNIVSC EGPLRMERHE  240
RVDQWRRRMS RAGFQAAPIK MVAQSKQWLL KNKVCEGYTV VEEKGCLVFG WKSRPIVAVS  300
CWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-53230287378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352581e-88AC235258.1 Glycine max strain Williams 82 clone GM_WBb0038A12, complete sequence.
GenBankAC2354031e-88AC235403.1 Glycine max strain Williams 82 clone GM_WBb0124A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210296.10.0scarecrow-like protein 21
TrEMBLA0A0B2Q2780.0A0A0B2Q278_GLYSO; DELLA protein RGL1
STRINGGLYMA17G13680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-71RGA-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]