PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14028.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 355aa    MW: 39392.2 Da    PI: 8.2903
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14028.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.43.9e-3252164289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssasnsssg... 88 
                  g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++         s++++++   s+s+++++   
  KHN14028.1  52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSvnnftlgypSAVTSNEATTSNSQPNEQlln 150
                 689*************************************************************66666543333322222222222222222222333 PP

         TCP  89 .............k 89 
                              +
  KHN14028.1 151 inrsiqwedsnhnS 164
                 43444444322220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2954181IPR005333Transcription factor, TCP
PROSITE profilePS5136931.33754112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIKSQKEADF QLKQEGLSQS INDPEKAKAT SSSVAQWPRL KDPRIVRVSR AFGGKDRHSK  60
VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKHEID ELPPLPIIPS  120
VNNFTLGYPS AVTSNEATTS NSQPNEQLLN INRSIQWEDS NHNSTWKLKA KEVSGEMVST  180
DKPNWISRSE EDKQGSNNQG PSTHVIPNIN LLPRANLNHP SFLGLLNTMP HGYRWEHSAG  240
DVSHPLGNNE LSNLTDIHNN INVVPFPTSS LSLSTGNSQI MLCPPGATQP YFPSHVTAMD  300
MDPRQINHYQ MLSSGSENPL ANSLNHSFSL AMMAHKPLLS PNSSKSPSHK DQDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1859113155Putative transcription factor PCF6
5zkt_B4e-1859113155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245016.10.0transcription factor TCP13-like
RefseqXP_028245017.10.0transcription factor TCP13-like
TrEMBLA0A0B2Q2180.0A0A0B2Q218_GLYSO; Transcription factor TCP13
STRINGGLYMA08G27155.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-41plastid transcription factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]