PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13993.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 731aa    MW: 82076.5 Da    PI: 6.3045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13993.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.2e-1103597291374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+av+++d + a++lL++++++++p gd +qRla+ f+ +L+arl++++s++yk l +++ts    ++ l+a++l+  ++P+ k++ ++ N
  KHN13993.1 359 LRTLLVLCAQAVAADDYKGANELLKQIRQHSNPFGDGNQRLAHIFADGLEARLSGTGSQIYKGLVSKRTS---AADFLKAYHLYLAACPFRKMTAFISN 454
                 5789************************************************************999999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I ++ +++ r+HiiDf+i +G+QWp+L+q L+  ++g+p+lRiTg++sp++g   +e++ etg+rLa +Ae+++v+fe+n+ +ak++e+++leeL++
  KHN13993.1 455 VTIRKSSANSPRLHIIDFGILYGFQWPTLIQRLSL-AGGAPKLRITGIDSPQPGfrPAERIVETGRRLAAYAESFKVEFEYNA-IAKKWETIQLEELKI 551
                 *********************************99.79*********************************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E l+V + ++ +++ldesv ++s+r+++L+l+++++P+++++   +   n++ F++rf eal +ys+lfd+lea ++re+ er+ +E+e++gre+ 
  KHN13993.1 552 DRDEYLVVTCFYRGKNVLDESVVVDSPRNKFLSLIRKINPNIFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLEAIVSREEWERMLIEKEIFGREAL 650
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg er+er et+++W++r+ +aGF + p++ +++k a   + + + + + ++e+s++l++gWk+r ++++S+W+
  KHN13993.1 651 NVIACEGCERVERPETYRQWQARILRAGFLQQPFEREIVKRAIEKVTTSYHKDFVIDEDSQWLLQGWKGRIIYALSCWK 729
                 ******************************************99999999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.943333709IPR005202Transcription factor GRAS
PfamPF035141.8E-107359729IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MDPRLLGFSG SPNEIQLGNQ RFENGFFDQS REFGYLQSNL LPTDTPSSSS VWTHEEPSPE  60
DCEFSDGILS YISQILMEED MEDKTCMLQD SLDLQIAERS FYEVIGEKYP SSPLGHPSSV  120
DPDDGGGVDN FSENYGTCSY NDGDLSSIFT NNSLRRNLGE LPNQNFRGNS ISRSSYSSPN  180
SVISSVEGPV DSPSSILQVP DLNSETQSIL QFQKGVEEAS KFLPSGNGLF ANLGVANFSK  240
LEPRVGSDEL PVKVEKDEGE SFPAGSKIRK HHHREEGGVE ENRSSKQAAI FSEPTLRSSM  300
IDIILLHSLG DGKKHFMARR EALQTKNDQI VVSNGKSKAS NGGKGRSKKQ NGKKEVVDLR  360
TLLVLCAQAV AADDYKGANE LLKQIRQHSN PFGDGNQRLA HIFADGLEAR LSGTGSQIYK  420
GLVSKRTSAA DFLKAYHLYL AACPFRKMTA FISNVTIRKS SANSPRLHII DFGILYGFQW  480
PTLIQRLSLA GGAPKLRITG IDSPQPGFRP AERIVETGRR LAAYAESFKV EFEYNAIAKK  540
WETIQLEELK IDRDEYLVVT CFYRGKNVLD ESVVVDSPRN KFLSLIRKIN PNIFIHGITN  600
GAFNAPFFVT RFREALFHYS SLFDMLEAIV SREEWERMLI EKEIFGREAL NVIACEGCER  660
VERPETYRQW QARILRAGFL QQPFEREIVK RAIEKVTTSY HKDFVIDEDS QWLLQGWKGR  720
IIYALSCWKP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-413427301379Protein SCARECROW
5b3h_D2e-413427301379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602595.10.0scarecrow-like protein 9 isoform X1
RefseqXP_006602598.10.0scarecrow-like protein 9 isoform X1
RefseqXP_006602599.10.0scarecrow-like protein 9 isoform X1
RefseqXP_014626521.10.0scarecrow-like protein 9 isoform X1
RefseqXP_014626522.10.0scarecrow-like protein 9 isoform X1
RefseqXP_014626523.10.0scarecrow-like protein 9 isoform X1
RefseqXP_014626524.10.0scarecrow-like protein 9 isoform X1
RefseqXP_014626525.10.0scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0B2Q1Y30.0A0A0B2Q1Y3_GLYSO; Scarecrow-like protein 9
STRINGGLYMA18G39920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]