PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN13933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24495.9 Da PI: 7.1767 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.1 | 2.5e-07 | 56 | 139 | 7 | 90 |
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+e GF ++ +s ++ + g+ C ++ + + +k++ rr + + ++gC kl+ k+ + w+v+ + + HnHel+ KHN13933.1 56 AHENGFVAVIMRSDTHtGNRGRSSFVLIGCEMSDQYKCRKNE--FVRRDTGSRKCGCPFKLRGKQVIgGQSWMVKLICEIHNHELV 139 8999**999988877724445555555669999998888877..8999999************9999899**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 56 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDEDQWTYDN TMFQEVDMDY ENEQEYGLNE PHVDCSDAFN TSQVFGYVLQ WARSVAHENG 60 FVAVIMRSDT HTGNRGRSSF VLIGCEMSDQ YKCRKNEFVR RDTGSRKCGC PFKLRGKQVI 120 GGQSWMVKLI CEIHNHELVK SLVGHPYSRR LTKDEKTIIA DMTKSMSMVK PRNILLTLKE 180 HNANSCKLSN KYTMQEVHTV LPLEEVIPKC NM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN13933.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235444 | 0.0 | AC235444.1 Glycine max strain Williams 82 clone GM_WBb0158O04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028202184.1 | 1e-125 | uncharacterized protein LOC114386380 | ||||
TrEMBL | A0A0B2Q1S6 | 1e-160 | A0A0B2Q1S6_GLYSO; Uncharacterized protein (Fragment) | ||||
STRING | GLYMA15G18460.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |
Publications ? help Back to Top | |||
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