PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN13818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27438.2 Da PI: 9.147 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a++k++g KHN13818.1 55 PHYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDKAALKFKG 105 68********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-14 | 55 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-34 | 55 | 114 | No hit | No description |
SMART | SM00380 | 6.2E-39 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.829 | 56 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-33 | 56 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 56 | 114 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.9E-12 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-12 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSEMVSALAQ VMGTTNRNPY MPQSTSFPFS TSVVKDQPQP YPSQPPPDQE VTKKPHYRGV 60 RQRPWGKWAA EIRDPKKAAR VWLGTFETAE DAALAYDKAA LKFKGTKAKL NFPERVHQDV 120 PFMQQHQQRS SNRNVFPIHA TSTTSSATGS VSSVDAVAPP SLSTHDQHGH QVFPNLYQYA 180 QILSSDDAQL PYFTSHLFNQ QQQQQQQQPF NSQFSSTFSS TSSYFYNQQQ QYDQQGHDHS 240 NH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-29 | 53 | 117 | 2 | 67 | ATERF1 |
3gcc_A | 3e-29 | 53 | 117 | 2 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN13818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031094 | 0.0 | KT031094.1 Glycine max clone HN_CCL_150 AP2-EREBP transcription factor (Glyma18g51680.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028212635.1 | 1e-178 | ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A445FYP6 | 1e-177 | A0A445FYP6_GLYSO; Ethylene-responsive transcription factor ERF113 | ||||
STRING | GLYMA18G51680.1 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-28 | related to AP2 6l |
Publications ? help Back to Top | |||
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