PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13586.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 335aa    MW: 37170.3 Da    PI: 7.6565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13586.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-33127184260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  KHN13586.1 127 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 184
                 8****************************************.***************85 PP
2WRKY35.52e-11314335122
                 ---SS-EEEEEEE--TT-SS-E CS
        WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                 ldDgy+WrKYGqK+vkg+++pr
  KHN13586.1 314 LDDGYRWRKYGQKVVKGNPHPR 335
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28118186IPR003657WRKY domain
PROSITE profilePS5081123.606121185IPR003657WRKY domain
SuperFamilySSF1182906.28E-26125185IPR003657WRKY domain
SMARTSM007749.7E-36126184IPR003657WRKY domain
PfamPF031066.7E-25127183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-13299335IPR003657WRKY domain
SuperFamilySSF1182901.16E-9306335IPR003657WRKY domain
PROSITE profilePS5081116.352309335IPR003657WRKY domain
PfamPF031062.8E-7315335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNLVIARSPV FTVPPGLSPS GFLNSPGFFS PQSPFGMSHQ QALAQVTAQA VLAQSHMHMQ  60
ADYQMPSVTA PTEPPVQQLS FALNEASEQQ VVSCVSEPRN AQLEAPELSQ ADKKYQPSSQ  120
AIDKPADDGY NWRKYGQKQV KGSEYPRSYY KCTHLNCVVK KKVERAPDGH ITEIIYKGQH  180
NHEKPQANRR AKDNSDSNGN VTVQPKSESN SQGWVGQLNK LSENIPNSSV PESDQTSNQG  240
APRQLLPGSN ESEEVGIVDN REEADDGEPN PKRRQAKFLL FRNTDVGVSE VPLSQKTVTE  300
PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-171271851877Probable WRKY transcription factor 4
2lex_A8e-171271851877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13586.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753550.0EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602933.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-90WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A445FXY30.0A0A445FXY3_GLYSO; Putative WRKY transcription factor 3 isoform B
TrEMBLI1N4H10.0I1N4H1_SOYBN; Uncharacterized protein
STRINGGLYMA18G49830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-83WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]