PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13541.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 384aa    MW: 43005.4 Da    PI: 9.9767
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13541.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.2e-30812022113
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnss 86 
                  g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ +              s     ++++++   s+s+++
  KHN13541.1  81 FGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKHEIDELPPLpvvpsvnnftlghpS-----AVTSNEATTSNSQPN 174
                 689*************************************************************666555555442221.....222222222222222 PP

         TCP  87 sg............kaaksaakskksqksaasalnlake 113
                 ++            +           +++++ +l++++ 
  KHN13541.1 175 EQllninrsiqwegS-----------NQNSTWKLKPKEV 202
                 223333333334321...........2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.85883141IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2883213IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVPWNRILTI TKWKDKTQHL ATNNERHKIM IKSPKEADFP LKQEGHSQSI TDPEKAKASA  60
SSVAQWPRLK DPRIVRVSRA FGGKDRHSKV FTIRGLRDRR VRLSVPTAIQ LYDLQDRLGL  120
SQPSKVVDWL LDAAKHEIDE LPPLPVVPSV NNFTLGHPSA VTSNEATTSN SQPNEQLLNI  180
NRSIQWEGSN QNSTWKLKPK EVSREMISTD KPNWISRSEE DKQGSNNEGP STRVIPNINL  240
LPRANLNHPS FLGLLNTMPH GYQWEPSAGD VSHQLGNNGF ANQTDMHSIN VVPFPTSTLS  300
LSTGNSQILL CPPGTAQPYF PSHVTMDMDP RQINHYQMLS SGSQNPLANY LNHSFSLAMM  360
THKPLHSPNS SKSPSHKDQD FPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1888142155Putative transcription factor PCF6
5zkt_B2e-1888142155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552583.10.0transcription factor TCP13
TrEMBLK7MUZ00.0K7MUZ0_SOYBN; Uncharacterized protein
STRINGGLYMA18G50371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.22e-40plastid transcription factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]